ENCODE pilot phase data contributors |
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These researchers received NHGRI funds for the
large-scale application of existing technologies
to determine functional elements across all
ENCODE target regions.
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Ian Dunham, David Vetrie, and Nigel Carter,
The Wellcome Trust Sanger Institute,
Hinxton, U.K.
Detecting human functional sequences with microarrays
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Anindya Dutta, University of Virginia,
Charlottesville
Mapping replication elements on human chromosomes
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Thomas Gingeras,
Affymetrix, Inc., Santa Clara, California
Mapping sites of transcription and
regulation
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Roderic Guigo,
Municipal Institute of Medical Research,
Barcelona, Spain
Encyclopedia of genes and gene variants
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Richard Myers, Stanford University, Palo
Alto, California
The Stanford ENCODE Project
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Bing Ren,
Ludwig Institute for Cancer Research,
University of California, San Diego
Mapping transcriptional regulatory elements in human DNA
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Michael Snyder, Yale University, New
Haven, Connecticut
Transcription and regulatory elements in ENCODE regions
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George Stamatoyannopoulos,
University of Washington, Seattle
Identification of functional DNA elements by HSqPCR
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Groups participating in the ENCODE Technology Development Phase
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These researchers received NHGRI funds to improve or
develop new technologies for finding functional elements in
genomic DNA, and will employ them across all ENCODE target
regions. Groups that are also participating in the ENCODE
Pilot Phase are marked with a star (*).
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Job Dekker, University of Massachusetts
Medical School, Worcester
Structural annotation of the human genome
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Xiang-Dong Fu, University of California,
San Diego
A novel chIP-chip technology for ENCODE
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Roland Green *,
Nimblegen Systems, Inc., Madison,
Wisconsin
Discovery of binding sites for transcription factors
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Robert Kingston,
Massachusetts General Hospital, Boston
Long-range, high-resolution mapping of chromatin
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Mark McCormick,
Nimblegen Systems, Inc., Madison,
Wisconsin
DNA array-based exon detection and linkage mapping
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Zhiping Weng *, Boston University
Alternative promoter usage in tissue-specific gene expression
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Second round of technology development grantees (September
2004):
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Joseph Ecker, Salk Institute
Genome Wide Analysis of DNA Methylation
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Vishwanath Iyer, University of Texas,
Austin
STAGE and FAIRE for Regulatory Element Identification
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Madaiah Puttaraju,
Intronn, Inc.
Use of RNA trans-splicing to identify splice sites
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Yijun Ruan,
Genome Institute of Singapore
Ditag technologies for complete transcriptome annotation
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Scott Tenenbaum, SUNY Albany
Identifying functional regulatory elements in RNA
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Tom Tullius, Boston University
Structure of genomic DNA at single-nucleotide resolution
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These researchers provided infrastructure development
to support ENCODE-related research.
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Andreas D. Baxevanis,
NHGRI Division of Intramural Research
Coordination of the database for other data types
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Pieter De Jong, Children's Hospital Oakland Research
Institute
Clone
resources to support comparative sequencing.
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Eric Green,
NIH Intramural Sequencing Center
Comparative sequencing
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Ross Hardison,
Webb Miller,
Pennsylvania State University
Computational tools for comparative genomics; collaboration with UCSC
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Jim Kent,
David Haussler, Kate Rosenbloom, Daryl Thomas, Ting
Wang, and the
UCSC Genome Bioinformatics staff
Coordination of the Genome Browser website and the database
for all sequence-related data
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Kerstin Lindblad-Toh, Michele Clamp,
Broad
Institute
Computational tools for comparative genomics and prediction
of cis-regulatory elements
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Marco Marra,
British Columbia Cancer Agency Genome Sciences Center
Generation of maps and contigs for ENCODE BACs
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Greg Schuler,
National Center for Biotechnology Information
(NCBI)
Coordination of ENCODE data with NCBI
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Additional ENCODE pilot phase participants:
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