Track Data Hubs
 

Track data hubs are collections of external tracks that can be imported into the UCSC Genome Browser. Hub tracks show up under the hub's own blue label bar on the main browser page, as well as on the configure page. For more information, including where to host your track hub, see the User's Guide.To import a public hub click its "Connect" button below.

NOTE: Because Track Hubs are created and maintained by external sources, UCSC is not responsible for their content.

Filter hubs by assembly:

Clicking Connect redirects to the gateway page of the selected hub's default assembly.
Display Hub Name Description Assemblies
454 K562andHelaS3RNAseq ERROR: Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
Blueprint Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt Debug Help hg38
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%[email protected]/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cancer genome polyA site & usage ERROR: Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC and MyCancerGenome.org hg19
CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver hg19
CESAR Gene Mappings ERROR: Couldn't open https://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/rn5/trackDb.txt Debug Help [+] bosTau7, ailMel1, allMis1, amaVit1, anaPla1...
CPTAC Hub v1 ERROR: Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
Croc and Bird Hub ERROR: Couldn't open http://hgwdev.cse.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
DASHR small ncRNA DASHR Human non-coding RNA annotation hg19
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, danRer7, canFam3...
EcoliCompHub ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
ENCODE Analysis Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
facebase hub ERROR: Couldn't open http://trackhub.facebase.org/hub.txt Debug Help mm9, mm10, hg18, hg19
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9
FANTOM5 CAGE RECLU DATA RIKEN FANTOM5 CAGE clusters by RECLU hg19, hg18
GRC Genome Issues under Review ERROR: Couldn't open http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt Debug Help hg38, hg19, mm10, mm9, danRer7, danRer10
GTEx RNA-seq Signal Hub ERROR: Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtex/hg19/trackDb.txt Debug Help hg19, hg38
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
McGill EMC (CEEHRC) ERROR: TCP non-blocking connect() to epigenomesportal.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells mm9
Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases hg38, hg19
Peterhof_yeasts ERROR: Host public.dobzhanskycenter.ru not found --> Name or service not known Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10
Plants CSHL Biology of Genomes meeting 2013 demonstration assembly hub araTha1, braRap1, ricCom1
Porcine DNA methylation and gene transcription ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl IP 137.224.17.168 timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/TJ_Tabasco/hub.txt Debug Help susScr3
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. danRer7
rfam12_ncRNA ERROR: ftp server response timed out > 1000000 microsec Couldn't open ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/hub.txt Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
Translation Initiation Sites (TIS) ERROR: TCP non-blocking connect() to gengastro.1med.uni-kiel.de IP 134.245.63.202 timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://gengastro.1med.uni-kiel.de/suppl/footprint/Hub/tisHub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
Ultraconserved Elements ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
Vista Enhancers Vista Browser Track Hub hg19, mm9, mm10
ZebrafishGenomics Burgess Lab Zebrafish Genomic Resources danRer10, danRer7
454 K562andHelaS3RNAseq ERROR: Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
Blueprint Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt Debug Help hg38
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%[email protected]/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cancer genome polyA site & usage ERROR: Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC and MyCancerGenome.org hg19
CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver hg19
CESAR Gene Mappings ERROR: Couldn't open https://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/rn5/trackDb.txt Debug Help [+] bosTau7, ailMel1, allMis1, amaVit1, anaPla1...
CPTAC Hub v1 ERROR: Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
Croc and Bird Hub ERROR: Couldn't open http://hgwdev.cse.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
DASHR small ncRNA DASHR Human non-coding RNA annotation hg19
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, danRer7, canFam3...
EcoliCompHub ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
ENCODE Analysis Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
facebase hub ERROR: Couldn't open http://trackhub.facebase.org/hub.txt Debug Help mm9, mm10, hg18, hg19
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9
FANTOM5 CAGE RECLU DATA RIKEN FANTOM5 CAGE clusters by RECLU hg19, hg18
GRC Genome Issues under Review ERROR: Couldn't open http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt Debug Help hg38, hg19, mm10, mm9, danRer7, danRer10
GTEx RNA-seq Signal Hub ERROR: Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtex/hg19/trackDb.txt Debug Help hg19, hg38
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
McGill EMC (CEEHRC) ERROR: TCP non-blocking connect() to epigenomesportal.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells mm9
Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases hg38, hg19
Peterhof_yeasts ERROR: Host public.dobzhanskycenter.ru not found --> Name or service not known Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10
Plants CSHL Biology of Genomes meeting 2013 demonstration assembly hub araTha1, braRap1, ricCom1
Porcine DNA methylation and gene transcription ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl IP 137.224.17.168 timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/TJ_Tabasco/hub.txt Debug Help susScr3
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. danRer7
rfam12_ncRNA ERROR: ftp server response timed out > 1000000 microsec Couldn't open ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/hub.txt Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
Translation Initiation Sites (TIS) ERROR: TCP non-blocking connect() to gengastro.1med.uni-kiel.de IP 134.245.63.202 timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://gengastro.1med.uni-kiel.de/suppl/footprint/Hub/tisHub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
Ultraconserved Elements ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
Vista Enhancers Vista Browser Track Hub hg19, mm9, mm10
ZebrafishGenomics Burgess Lab Zebrafish Genomic Resources danRer10, danRer7
Display Hub Name Description Assemblies
Track Collections Track Collections hg19
Track Collections Track Collections mm9
Contact us to add a public hub.