Non-coding RNA Super-track Settings
 
RNA sequences that do not code for a protein Tracks   (All Genes and Gene Predictions tracks)

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 All
lincRNA RNA-Seq  lincRNA RNA-Seq reads expression abundances  
lincRNA TUCP  lincRNA and TUCP transcripts  
sno/miRNA  C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase  Data version: miRBase Release 22 (March 2018) and snoRNABase Version 3 (lifted from hg19)
tRNA Genes  Transfer RNA Genes Identified with tRNAscan-SE  

Description

This is a super track for non-coding RNA data, subtracks represent some form of non-coding RNA data.

Credits

The body map RNA-Seq data was kindly provided by the Gene Expression Applications research group at Illumina.

Genome coordinates for the sno/miRNA track were obtained from the miRBase sequences FTP site and from snoRNABase coordinates download page.

References

When making use of these data, please cite the folowing articles in addition to the primary sources of the miRNA sequences:

Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Res. 2008 Jan 1;36(Database issue):D154-8.

Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.

Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.

Weber MJ. New human and mouse microRNA genes found by homology search.

You may also want to cite The Wellcome Trust Sanger Institute miRBase and The Laboratoire de Biologie Moleculaire Eucaryote snoRNABase.

The following publication provides guidelines on miRNA annotation: Ambros V. et al., A uniform system for microRNA annotation. RNA. 2003;9(3):277-9.

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011 Sep 15;25(18):1915-27. PMID: 21890647; PMC: PMC3185964

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010 May;28(5):511-5. PMID: 20436464; PMC: PMC3146043