SRP047086 Track Settings
 
A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte]   (Human methylome studies)

This track is part of a parent called 'Human methylome studies'. To show other tracks of this parent, go to the Human methylome studies configuration page.

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Select views (help):
CpG reads ▾       CpG methylation ▾       AMR       PMD       HMR      
Select subtracks by views and experiment:
 All views CpG reads  CpG methylation  AMR  PMD  HMR 
experiment
SRX9500354 
SRX9500355 
SRX9500356 
SRX9500357 
SRX9500358 
SRX9500359 
SRX9500360 
SRX9500362 
SRX9500363 
SRX9500364 
SRX9500367 
SRX9500368 
SRX9500369 
SRX9500370 
SRX9500371 
SRX9500374 
SRX9500376 
SRX9500377 
SRX9500378 
SRX9500381 
SRX9500382 
SRX9500383 
SRX9500385 
SRX9500386 
SRX9500387 
SRX9500388 
SRX9500389 
SRX9500390 
SRX9500391 
SRX9500392 
SRX9500393 
SRX9500394 
SRX9500396 
SRX9500397 
SRX9500398 
SRX9500399 
SRX9500400 
SRX9500401 
SRX9500402 
SRX9500403 
SRX9500404 
SRX9500405 
SRX9500407 
SRX9500408 
SRX9500409 
SRX9500410 
SRX9500411 
SRX9500412 
SRX9500415 
SRX9500416 
SRX9500418 
SRX9500419 
SRX9500420 
SRX9500421 
SRX9500422 
SRX9500423 
SRX9500424 
SRX9500425 
SRX9500426 
SRX9500427 
SRX9500429 
SRX9500432 
SRX9500433 
SRX9500434 
SRX9500435 
SRX9500436 
SRX9500437 
SRX9500438 
SRX9500440 
SRX9500441 
SRX9500442 
SRX9500445 
SRX9500446 
SRX9500447 
SRX9500448 
SRX9500449 
SRX9500451 
SRX9500452 
SRX9500455 
SRX9500456 
SRX9500458 
SRX9500459 
SRX9500463 
SRX9500464 
SRX9500465 
SRX9500466 
SRX9500467 
SRX9500468 
SRX9500470 
SRX9500471 
SRX9500472 
SRX9500473 
SRX9500475 
SRX9500476 
SRX9500478 
SRX9500479 
SRX9500480 
SRX9500481 
SRX9500482 
SRX9500483 
SRX9500484 
SRX9500485 
SRX9500486 
SRX9500487 
SRX9500488 
SRX9500489 
SRX9500490 
SRX9500491 
SRX9500493 
SRX9500494 
SRX9500495 
SRX9500496 
SRX9500497 
SRX9500498 
SRX9500499 
SRX9500500 
SRX9500501 
SRX9500502 
SRX9500505 
SRX9500506 
SRX9500507 
SRX9500508 
SRX9500509 
SRX9500510 
SRX9500511 
SRX9500512 
SRX9500513 
SRX9500514 
SRX9500516 
SRX9500517 
SRX9500518 
SRX9500519 
SRX9500520 
SRX9500521 
SRX9500522 
SRX9500523 
SRX9500524 
SRX9500585 
SRX9500586 
SRX9500587 
SRX9500589 
SRX9500590 
SRX9500591 
SRX9500592 
SRX9500593 
SRX9500594 
SRX9500595 
SRX9500596 
SRX9500597 
SRX9500598 
SRX9500599 
SRX9500600 
SRX9500602 
SRX9500603 
SRX9500604 
SRX9500605 
SRX9500607 
SRX9500620 
SRX9500621 
SRX9500622 
SRX9500623 
SRX9500624 
SRX9500626 
SRX9500627 
SRX9500628 
SRX9500629 
SRX9500630 
SRX9500631 
SRX9500632 
SRX9500633 
SRX9500634 
SRX9500635 
SRX9500637 
SRX9500638 
SRX9500639 
SRX9500640 
SRX9500641 
SRX9500642 
SRX9500643 
SRX9500644 
SRX9500645 
SRX9500646 
SRX9500648 
SRX9500649 
SRX9500653 
SRX9500654 
SRX9500655 
SRX9500656 
SRX9500657 
SRX9500659 
SRX9500660 
SRX9500661 
SRX9500662 
SRX9500663 
SRX9500664 
SRX9500665 
SRX9500668 
SRX9500670 
experiment
 All views CpG reads  CpG methylation  AMR  PMD  HMR 
List subtracks: only selected/visible    all    ()
  experiment↓1 views↓2   Track Name↓3  
hide
 SRX9500354  CpG methylation  B-Lymphocyte / SRX9500354 (CpG methylation)   schema 
hide
 SRX9500356  HMR  B-Lymphocyte / SRX9500356 (HMR)   schema 
hide
 SRX9500355  CpG methylation  B-Lymphocyte / SRX9500355 (CpG methylation)   schema 
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 SRX9500357  HMR  B-Lymphocyte / SRX9500357 (HMR)   schema 
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 SRX9500356  CpG methylation  B-Lymphocyte / SRX9500356 (CpG methylation)   schema 
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 SRX9500358  HMR  B-Lymphocyte / SRX9500358 (HMR)   schema 
hide
 SRX9500357  CpG methylation  B-Lymphocyte / SRX9500357 (CpG methylation)   schema 
hide
 SRX9500359  HMR  B-Lymphocyte / SRX9500359 (HMR)   schema 
hide
 SRX9500358  CpG methylation  B-Lymphocyte / SRX9500358 (CpG methylation)   schema 
hide
 SRX9500360  HMR  B-Lymphocyte / SRX9500360 (HMR)   schema 
hide
 SRX9500359  CpG methylation  B-Lymphocyte / SRX9500359 (CpG methylation)   schema 
hide
 SRX9500362  HMR  B-Lymphocyte / SRX9500362 (HMR)   schema 
hide
 SRX9500360  CpG methylation  B-Lymphocyte / SRX9500360 (CpG methylation)   schema 
hide
 SRX9500363  HMR  B-Lymphocyte / SRX9500363 (HMR)   schema 
hide
 SRX9500364  HMR  B-Lymphocyte / SRX9500364 (HMR)   schema 
hide
 SRX9500362  CpG methylation  B-Lymphocyte / SRX9500362 (CpG methylation)   schema 
hide
 SRX9500363  CpG methylation  B-Lymphocyte / SRX9500363 (CpG methylation)   schema 
hide
 SRX9500392  HMR  B-Lymphocyte / SRX9500392 (HMR)   schema 
hide
 SRX9500364  CpG methylation  B-Lymphocyte / SRX9500364 (CpG methylation)   schema 
hide
 SRX9500393  HMR  B-Lymphocyte / SRX9500393 (HMR)   schema 
hide
 SRX9500367  CpG methylation  B-Lymphocyte / SRX9500367 (CpG methylation)   schema 
hide
 SRX9500394  HMR  B-Lymphocyte / SRX9500394 (HMR)   schema 
hide
 SRX9500368  CpG methylation  B-Lymphocyte / SRX9500368 (CpG methylation)   schema 
hide
 SRX9500396  HMR  B-Lymphocyte / SRX9500396 (HMR)   schema 
hide
 SRX9500369  CpG methylation  B-Lymphocyte / SRX9500369 (CpG methylation)   schema 
hide
 SRX9500397  HMR  B-Lymphocyte / SRX9500397 (HMR)   schema 
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 SRX9500370  CpG methylation  B-Lymphocyte / SRX9500370 (CpG methylation)   schema 
hide
 SRX9500398  HMR  B-Lymphocyte / SRX9500398 (HMR)   schema 
hide
 SRX9500371  CpG methylation  B-Lymphocyte / SRX9500371 (CpG methylation)   schema 
hide
 SRX9500399  HMR  B-Lymphocyte / SRX9500399 (HMR)   schema 
hide
 SRX9500374  CpG methylation  B-Lymphocyte / SRX9500374 (CpG methylation)   schema 
hide
 SRX9500400  HMR  B-Lymphocyte / SRX9500400 (HMR)   schema 
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 SRX9500376  CpG methylation  B-Lymphocyte / SRX9500376 (CpG methylation)   schema 
hide
 SRX9500401  HMR  B-Lymphocyte / SRX9500401 (HMR)   schema 
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 SRX9500377  CpG methylation  B-Lymphocyte / SRX9500377 (CpG methylation)   schema 
hide
 SRX9500402  HMR  B-Lymphocyte / SRX9500402 (HMR)   schema 
hide
 SRX9500378  CpG methylation  B-Lymphocyte / SRX9500378 (CpG methylation)   schema 
hide
 SRX9500403  HMR  B-Lymphocyte / SRX9500403 (HMR)   schema 
hide
 SRX9500381  CpG methylation  B-Lymphocyte / SRX9500381 (CpG methylation)   schema 
hide
 SRX9500404  HMR  B-Lymphocyte / SRX9500404 (HMR)   schema 
hide
 SRX9500382  CpG methylation  B-Lymphocyte / SRX9500382 (CpG methylation)   schema 
hide
 SRX9500405  HMR  B-Lymphocyte / SRX9500405 (HMR)   schema 
hide
 SRX9500383  CpG methylation  B-Lymphocyte / SRX9500383 (CpG methylation)   schema 
hide
 SRX9500407  HMR  B-Lymphocyte / SRX9500407 (HMR)   schema 
hide
 SRX9500385  CpG methylation  B-Lymphocyte / SRX9500385 (CpG methylation)   schema 
hide
 SRX9500408  HMR  B-Lymphocyte / SRX9500408 (HMR)   schema 
hide
 SRX9500409  HMR  B-Lymphocyte / SRX9500409 (HMR)   schema 
hide
 SRX9500386  CpG methylation  B-Lymphocyte / SRX9500386 (CpG methylation)   schema 
hide
 SRX9500387  CpG methylation  B-Lymphocyte / SRX9500387 (CpG methylation)   schema 
hide
 SRX9500416  HMR  B-Lymphocyte / SRX9500416 (HMR)   schema 
hide
 SRX9500388  CpG methylation  B-Lymphocyte / SRX9500388 (CpG methylation)   schema 
hide
 SRX9500418  HMR  B-Lymphocyte / SRX9500418 (HMR)   schema 
hide
 SRX9500419  HMR  B-Lymphocyte / SRX9500419 (HMR)   schema 
hide
 SRX9500389  CpG methylation  B-Lymphocyte / SRX9500389 (CpG methylation)   schema 
hide
 SRX9500390  CpG methylation  B-Lymphocyte / SRX9500390 (CpG methylation)   schema 
hide
 SRX9500420  HMR  B-Lymphocyte / SRX9500420 (HMR)   schema 
hide
 SRX9500391  CpG methylation  B-Lymphocyte / SRX9500391 (CpG methylation)   schema 
hide
 SRX9500421  HMR  B-Lymphocyte / SRX9500421 (HMR)   schema 
hide
 SRX9500392  CpG methylation  B-Lymphocyte / SRX9500392 (CpG methylation)   schema 
hide
 SRX9500422  HMR  B-Lymphocyte / SRX9500422 (HMR)   schema 
hide
 SRX9500393  CpG methylation  B-Lymphocyte / SRX9500393 (CpG methylation)   schema 
hide
 SRX9500432  HMR  B-Lymphocyte / SRX9500432 (HMR)   schema 
hide
 SRX9500394  CpG methylation  B-Lymphocyte / SRX9500394 (CpG methylation)   schema 
hide
 SRX9500433  HMR  B-Lymphocyte / SRX9500433 (HMR)   schema 
hide
 SRX9500396  CpG methylation  B-Lymphocyte / SRX9500396 (CpG methylation)   schema 
hide
 SRX9500434  HMR  B-Lymphocyte / SRX9500434 (HMR)   schema 
hide
 SRX9500397  CpG methylation  B-Lymphocyte / SRX9500397 (CpG methylation)   schema 
hide
 SRX9500436  HMR  B-Lymphocyte / SRX9500436 (HMR)   schema 
hide
 SRX9500398  CpG methylation  B-Lymphocyte / SRX9500398 (CpG methylation)   schema 
hide
 SRX9500437  HMR  B-Lymphocyte / SRX9500437 (HMR)   schema 
hide
 SRX9500399  CpG methylation  B-Lymphocyte / SRX9500399 (CpG methylation)   schema 
hide
 SRX9500438  HMR  B-Lymphocyte / SRX9500438 (HMR)   schema 
hide
 SRX9500400  CpG methylation  B-Lymphocyte / SRX9500400 (CpG methylation)   schema 
hide
 SRX9500440  HMR  B-Lymphocyte / SRX9500440 (HMR)   schema 
hide
 SRX9500401  CpG methylation  B-Lymphocyte / SRX9500401 (CpG methylation)   schema 
hide
 SRX9500441  HMR  B-Lymphocyte / SRX9500441 (HMR)   schema 
hide
 SRX9500402  CpG methylation  B-Lymphocyte / SRX9500402 (CpG methylation)   schema 
hide
 SRX9500442  HMR  B-Lymphocyte / SRX9500442 (HMR)   schema 
hide
 SRX9500403  CpG methylation  B-Lymphocyte / SRX9500403 (CpG methylation)   schema 
hide
 SRX9500445  HMR  B-Lymphocyte / SRX9500445 (HMR)   schema 
hide
 SRX9500404  CpG methylation  B-Lymphocyte / SRX9500404 (CpG methylation)   schema 
hide
 SRX9500446  HMR  B-Lymphocyte / SRX9500446 (HMR)   schema 
hide
 SRX9500405  CpG methylation  B-Lymphocyte / SRX9500405 (CpG methylation)   schema 
hide
 SRX9500447  HMR  B-Lymphocyte / SRX9500447 (HMR)   schema 
hide
 SRX9500448  HMR  B-Lymphocyte / SRX9500448 (HMR)   schema 
hide
 SRX9500407  CpG methylation  B-Lymphocyte / SRX9500407 (CpG methylation)   schema 
hide
 SRX9500408  CpG methylation  B-Lymphocyte / SRX9500408 (CpG methylation)   schema 
hide
 SRX9500449  HMR  B-Lymphocyte / SRX9500449 (HMR)   schema 
hide
 SRX9500409  CpG methylation  B-Lymphocyte / SRX9500409 (CpG methylation)   schema 
hide
 SRX9500451  HMR  B-Lymphocyte / SRX9500451 (HMR)   schema 
hide
 SRX9500452  HMR  B-Lymphocyte / SRX9500452 (HMR)   schema 
hide
 SRX9500410  CpG methylation  B-Lymphocyte / SRX9500410 (CpG methylation)   schema 
hide
 SRX9500411  CpG methylation  B-Lymphocyte / SRX9500411 (CpG methylation)   schema 
hide
 SRX9500455  HMR  B-Lymphocyte / SRX9500455 (HMR)   schema 
hide
 SRX9500412  CpG methylation  B-Lymphocyte / SRX9500412 (CpG methylation)   schema 
hide
 SRX9500473  HMR  B-Lymphocyte / SRX9500473 (HMR)   schema 
hide
 SRX9500415  CpG methylation  B-Lymphocyte / SRX9500415 (CpG methylation)   schema 
hide
 SRX9500475  HMR  B-Lymphocyte / SRX9500475 (HMR)   schema 
hide
 SRX9500416  CpG methylation  B-Lymphocyte / SRX9500416 (CpG methylation)   schema 
hide
 SRX9500476  HMR  B-Lymphocyte / SRX9500476 (HMR)   schema 
hide
 SRX9500418  CpG methylation  B-Lymphocyte / SRX9500418 (CpG methylation)   schema 
hide
 SRX9500478  HMR  B-Lymphocyte / SRX9500478 (HMR)   schema 
hide
 SRX9500419  CpG methylation  B-Lymphocyte / SRX9500419 (CpG methylation)   schema 
hide
 SRX9500479  HMR  B-Lymphocyte / SRX9500479 (HMR)   schema 
hide
 SRX9500420  CpG methylation  B-Lymphocyte / SRX9500420 (CpG methylation)   schema 
hide
 SRX9500480  HMR  B-Lymphocyte / SRX9500480 (HMR)   schema 
hide
 SRX9500421  CpG methylation  B-Lymphocyte / SRX9500421 (CpG methylation)   schema 
hide
 SRX9500481  HMR  B-Lymphocyte / SRX9500481 (HMR)   schema 
hide
 SRX9500422  CpG methylation  B-Lymphocyte / SRX9500422 (CpG methylation)   schema 
hide
 SRX9500482  HMR  B-Lymphocyte / SRX9500482 (HMR)   schema 
hide
 SRX9500423  CpG methylation  B-Lymphocyte / SRX9500423 (CpG methylation)   schema 
hide
 SRX9500493  HMR  B-Lymphocyte / SRX9500493 (HMR)   schema 
hide
 SRX9500424  CpG methylation  B-Lymphocyte / SRX9500424 (CpG methylation)   schema 
hide
 SRX9500494  HMR  B-Lymphocyte / SRX9500494 (HMR)   schema 
hide
 SRX9500425  CpG methylation  B-Lymphocyte / SRX9500425 (CpG methylation)   schema 
hide
 SRX9500495  HMR  B-Lymphocyte / SRX9500495 (HMR)   schema 
hide
 SRX9500426  CpG methylation  B-Lymphocyte / SRX9500426 (CpG methylation)   schema 
hide
 SRX9500496  HMR  B-Lymphocyte / SRX9500496 (HMR)   schema 
hide
 SRX9500427  CpG methylation  B-Lymphocyte / SRX9500427 (CpG methylation)   schema 
hide
 SRX9500500  HMR  B-Lymphocyte / SRX9500500 (HMR)   schema 
hide
 SRX9500429  CpG methylation  B-Lymphocyte / SRX9500429 (CpG methylation)   schema 
hide
 SRX9500501  HMR  B-Lymphocyte / SRX9500501 (HMR)   schema 
hide
 SRX9500502  HMR  B-Lymphocyte / SRX9500502 (HMR)   schema 
hide
 SRX9500432  CpG methylation  B-Lymphocyte / SRX9500432 (CpG methylation)   schema 
hide
 SRX9500433  CpG methylation  B-Lymphocyte / SRX9500433 (CpG methylation)   schema 
hide
 SRX9500505  HMR  B-Lymphocyte / SRX9500505 (HMR)   schema 
hide
 SRX9500434  CpG methylation  B-Lymphocyte / SRX9500434 (CpG methylation)   schema 
hide
 SRX9500519  HMR  B-Lymphocyte / SRX9500519 (HMR)   schema 
hide
 SRX9500520  HMR  B-Lymphocyte / SRX9500520 (HMR)   schema 
hide
 SRX9500435  CpG methylation  B-Lymphocyte / SRX9500435 (CpG methylation)   schema 
hide
 SRX9500436  CpG methylation  B-Lymphocyte / SRX9500436 (CpG methylation)   schema 
hide
 SRX9500521  HMR  B-Lymphocyte / SRX9500521 (HMR)   schema 
hide
 SRX9500437  CpG methylation  B-Lymphocyte / SRX9500437 (CpG methylation)   schema 
hide
 SRX9500522  HMR  B-Lymphocyte / SRX9500522 (HMR)   schema 
hide
 SRX9500438  CpG methylation  B-Lymphocyte / SRX9500438 (CpG methylation)   schema 
hide
 SRX9500523  HMR  B-Lymphocyte / SRX9500523 (HMR)   schema 
hide
 SRX9500440  CpG methylation  B-Lymphocyte / SRX9500440 (CpG methylation)   schema 
hide
 SRX9500524  HMR  B-Lymphocyte / SRX9500524 (HMR)   schema 
hide
 SRX9500441  CpG methylation  B-Lymphocyte / SRX9500441 (CpG methylation)   schema 
hide
 SRX9500590  HMR  B-Lymphocyte / SRX9500590 (HMR)   schema 
hide
 SRX9500442  CpG methylation  B-Lymphocyte / SRX9500442 (CpG methylation)   schema 
hide
 SRX9500591  HMR  B-Lymphocyte / SRX9500591 (HMR)   schema 
hide
 SRX9500445  CpG methylation  B-Lymphocyte / SRX9500445 (CpG methylation)   schema 
hide
 SRX9500592  HMR  B-Lymphocyte / SRX9500592 (HMR)   schema 
hide
 SRX9500446  CpG methylation  B-Lymphocyte / SRX9500446 (CpG methylation)   schema 
hide
 SRX9500593  HMR  B-Lymphocyte / SRX9500593 (HMR)   schema 
hide
 SRX9500447  CpG methylation  B-Lymphocyte / SRX9500447 (CpG methylation)   schema 
hide
 SRX9500599  HMR  B-Lymphocyte / SRX9500599 (HMR)   schema 
hide
 SRX9500448  CpG methylation  B-Lymphocyte / SRX9500448 (CpG methylation)   schema 
hide
 SRX9500600  HMR  B-Lymphocyte / SRX9500600 (HMR)   schema 
hide
 SRX9500449  CpG methylation  B-Lymphocyte / SRX9500449 (CpG methylation)   schema 
hide
 SRX9500602  HMR  B-Lymphocyte / SRX9500602 (HMR)   schema 
hide
 SRX9500451  CpG methylation  B-Lymphocyte / SRX9500451 (CpG methylation)   schema 
hide
 SRX9500603  HMR  B-Lymphocyte / SRX9500603 (HMR)   schema 
hide
 SRX9500452  CpG methylation  B-Lymphocyte / SRX9500452 (CpG methylation)   schema 
hide
 SRX9500604  HMR  B-Lymphocyte / SRX9500604 (HMR)   schema 
hide
 SRX9500455  CpG methylation  B-Lymphocyte / SRX9500455 (CpG methylation)   schema 
hide
 SRX9500605  HMR  B-Lymphocyte / SRX9500605 (HMR)   schema 
hide
 SRX9500456  CpG methylation  B-Lymphocyte / SRX9500456 (CpG methylation)   schema 
hide
 SRX9500607  HMR  B-Lymphocyte / SRX9500607 (HMR)   schema 
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 SRX9500627  HMR  B-Lymphocyte / SRX9500627 (HMR)   schema 
hide
 SRX9500458  CpG methylation  B-Lymphocyte / SRX9500458 (CpG methylation)   schema 
hide
 SRX9500459  CpG methylation  B-Lymphocyte / SRX9500459 (CpG methylation)   schema 
hide
 SRX9500628  HMR  B-Lymphocyte / SRX9500628 (HMR)   schema 
hide
 SRX9500463  CpG methylation  B-Lymphocyte / SRX9500463 (CpG methylation)   schema 
hide
 SRX9500629  HMR  B-Lymphocyte / SRX9500629 (HMR)   schema 
hide
 SRX9500630  HMR  B-Lymphocyte / SRX9500630 (HMR)   schema 
hide
 SRX9500464  CpG methylation  B-Lymphocyte / SRX9500464 (CpG methylation)   schema 
hide
 SRX9500465  CpG methylation  B-Lymphocyte / SRX9500465 (CpG methylation)   schema 
hide
 SRX9500631  HMR  B-Lymphocyte / SRX9500631 (HMR)   schema 
hide
 SRX9500466  CpG methylation  B-Lymphocyte / SRX9500466 (CpG methylation)   schema 
hide
 SRX9500632  HMR  B-Lymphocyte / SRX9500632 (HMR)   schema 
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 SRX9500467  CpG methylation  B-Lymphocyte / SRX9500467 (CpG methylation)   schema 
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 SRX9500653  HMR  B-Lymphocyte / SRX9500653 (HMR)   schema 
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 SRX9500468  CpG methylation  B-Lymphocyte / SRX9500468 (CpG methylation)   schema 
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 SRX9500654  HMR  B-Lymphocyte / SRX9500654 (HMR)   schema 
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 SRX9500470  CpG methylation  B-Lymphocyte / SRX9500470 (CpG methylation)   schema 
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 SRX9500655  HMR  B-Lymphocyte / SRX9500655 (HMR)   schema 
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 SRX9500471  CpG methylation  B-Lymphocyte / SRX9500471 (CpG methylation)   schema 
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 SRX9500656  HMR  B-Lymphocyte / SRX9500656 (HMR)   schema 
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 SRX9500472  CpG methylation  B-Lymphocyte / SRX9500472 (CpG methylation)   schema 
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 SRX9500657  HMR  B-Lymphocyte / SRX9500657 (HMR)   schema 
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 SRX9500473  CpG methylation  B-Lymphocyte / SRX9500473 (CpG methylation)   schema 
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 SRX9500659  HMR  B-Lymphocyte / SRX9500659 (HMR)   schema 
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 SRX9500475  CpG methylation  B-Lymphocyte / SRX9500475 (CpG methylation)   schema 
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 SRX9500660  HMR  B-Lymphocyte / SRX9500660 (HMR)   schema 
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 SRX9500476  CpG methylation  B-Lymphocyte / SRX9500476 (CpG methylation)   schema 
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 SRX9500661  HMR  B-Lymphocyte / SRX9500661 (HMR)   schema 
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 SRX9500478  CpG methylation  B-Lymphocyte / SRX9500478 (CpG methylation)   schema 
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 SRX9500662  HMR  B-Lymphocyte / SRX9500662 (HMR)   schema 
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 SRX9500479  CpG methylation  B-Lymphocyte / SRX9500479 (CpG methylation)   schema 
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 SRX9500663  HMR  B-Lymphocyte / SRX9500663 (HMR)   schema 
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 SRX9500480  CpG methylation  B-Lymphocyte / SRX9500480 (CpG methylation)   schema 
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 SRX9500664  HMR  B-Lymphocyte / SRX9500664 (HMR)   schema 
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 SRX9500481  CpG methylation  B-Lymphocyte / SRX9500481 (CpG methylation)   schema 
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 SRX9500665  HMR  B-Lymphocyte / SRX9500665 (HMR)   schema 
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 SRX9500482  CpG methylation  B-Lymphocyte / SRX9500482 (CpG methylation)   schema 
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 SRX9500483  CpG methylation  B-Lymphocyte / SRX9500483 (CpG methylation)   schema 
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 SRX9500484  CpG methylation  B-Lymphocyte / SRX9500484 (CpG methylation)   schema 
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 SRX9500485  CpG methylation  B-Lymphocyte / SRX9500485 (CpG methylation)   schema 
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 SRX9500486  CpG methylation  B-Lymphocyte / SRX9500486 (CpG methylation)   schema 
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 SRX9500487  CpG methylation  B-Lymphocyte / SRX9500487 (CpG methylation)   schema 
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 SRX9500488  CpG methylation  B-Lymphocyte / SRX9500488 (CpG methylation)   schema 
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 SRX9500489  CpG methylation  B-Lymphocyte / SRX9500489 (CpG methylation)   schema 
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 SRX9500490  CpG methylation  B-Lymphocyte / SRX9500490 (CpG methylation)   schema 
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 SRX9500491  CpG methylation  B-Lymphocyte / SRX9500491 (CpG methylation)   schema 
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 SRX9500493  CpG methylation  B-Lymphocyte / SRX9500493 (CpG methylation)   schema 
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 SRX9500494  CpG methylation  B-Lymphocyte / SRX9500494 (CpG methylation)   schema 
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 SRX9500495  CpG methylation  B-Lymphocyte / SRX9500495 (CpG methylation)   schema 
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 SRX9500496  CpG methylation  B-Lymphocyte / SRX9500496 (CpG methylation)   schema 
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 SRX9500497  CpG methylation  B-Lymphocyte / SRX9500497 (CpG methylation)   schema 
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 SRX9500498  CpG methylation  B-Lymphocyte / SRX9500498 (CpG methylation)   schema 
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 SRX9500499  CpG methylation  B-Lymphocyte / SRX9500499 (CpG methylation)   schema 
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 SRX9500500  CpG methylation  B-Lymphocyte / SRX9500500 (CpG methylation)   schema 
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 SRX9500501  CpG methylation  B-Lymphocyte / SRX9500501 (CpG methylation)   schema 
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 SRX9500502  CpG methylation  B-Lymphocyte / SRX9500502 (CpG methylation)   schema 
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 SRX9500505  CpG methylation  B-Lymphocyte / SRX9500505 (CpG methylation)   schema 
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 SRX9500506  CpG methylation  B-Lymphocyte / SRX9500506 (CpG methylation)   schema 
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 SRX9500507  CpG methylation  B-Lymphocyte / SRX9500507 (CpG methylation)   schema 
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 SRX9500508  CpG methylation  B-Lymphocyte / SRX9500508 (CpG methylation)   schema 
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 SRX9500509  CpG methylation  B-Lymphocyte / SRX9500509 (CpG methylation)   schema 
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 SRX9500510  CpG methylation  B-Lymphocyte / SRX9500510 (CpG methylation)   schema 
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 SRX9500511  CpG methylation  B-Lymphocyte / SRX9500511 (CpG methylation)   schema 
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 SRX9500512  CpG methylation  B-Lymphocyte / SRX9500512 (CpG methylation)   schema 
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 SRX9500513  CpG methylation  B-Lymphocyte / SRX9500513 (CpG methylation)   schema 
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 SRX9500514  CpG methylation  B-Lymphocyte / SRX9500514 (CpG methylation)   schema 
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 SRX9500516  CpG methylation  B-Lymphocyte / SRX9500516 (CpG methylation)   schema 
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 SRX9500517  CpG methylation  B-Lymphocyte / SRX9500517 (CpG methylation)   schema 
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 SRX9500518  CpG methylation  B-Lymphocyte / SRX9500518 (CpG methylation)   schema 
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 SRX9500519  CpG methylation  B-Lymphocyte / SRX9500519 (CpG methylation)   schema 
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 SRX9500520  CpG methylation  B-Lymphocyte / SRX9500520 (CpG methylation)   schema 
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 SRX9500521  CpG methylation  B-Lymphocyte / SRX9500521 (CpG methylation)   schema 
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 SRX9500522  CpG methylation  B-Lymphocyte / SRX9500522 (CpG methylation)   schema 
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 SRX9500523  CpG methylation  B-Lymphocyte / SRX9500523 (CpG methylation)   schema 
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 SRX9500524  CpG methylation  B-Lymphocyte / SRX9500524 (CpG methylation)   schema 
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 SRX9500585  CpG methylation  B-Lymphocyte / SRX9500585 (CpG methylation)   schema 
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 SRX9500586  CpG methylation  B-Lymphocyte / SRX9500586 (CpG methylation)   schema 
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 SRX9500587  CpG methylation  B-Lymphocyte / SRX9500587 (CpG methylation)   schema 
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 SRX9500589  CpG methylation  B-Lymphocyte / SRX9500589 (CpG methylation)   schema 
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 SRX9500590  CpG methylation  B-Lymphocyte / SRX9500590 (CpG methylation)   schema 
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 SRX9500591  CpG methylation  B-Lymphocyte / SRX9500591 (CpG methylation)   schema 
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 SRX9500592  CpG methylation  B-Lymphocyte / SRX9500592 (CpG methylation)   schema 
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 SRX9500593  CpG methylation  B-Lymphocyte / SRX9500593 (CpG methylation)   schema 
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 SRX9500594  CpG methylation  B-Lymphocyte / SRX9500594 (CpG methylation)   schema 
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 SRX9500595  CpG methylation  B-Lymphocyte / SRX9500595 (CpG methylation)   schema 
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 SRX9500596  CpG methylation  B-Lymphocyte / SRX9500596 (CpG methylation)   schema 
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 SRX9500597  CpG methylation  B-Lymphocyte / SRX9500597 (CpG methylation)   schema 
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 SRX9500598  CpG methylation  B-Lymphocyte / SRX9500598 (CpG methylation)   schema 
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 SRX9500599  CpG methylation  B-Lymphocyte / SRX9500599 (CpG methylation)   schema 
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 SRX9500600  CpG methylation  B-Lymphocyte / SRX9500600 (CpG methylation)   schema 
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 SRX9500602  CpG methylation  B-Lymphocyte / SRX9500602 (CpG methylation)   schema 
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 SRX9500603  CpG methylation  B-Lymphocyte / SRX9500603 (CpG methylation)   schema 
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 SRX9500604  CpG methylation  B-Lymphocyte / SRX9500604 (CpG methylation)   schema 
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 SRX9500605  CpG methylation  B-Lymphocyte / SRX9500605 (CpG methylation)   schema 
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 SRX9500607  CpG methylation  B-Lymphocyte / SRX9500607 (CpG methylation)   schema 
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 SRX9500620  CpG methylation  B-Lymphocyte / SRX9500620 (CpG methylation)   schema 
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 SRX9500621  CpG methylation  B-Lymphocyte / SRX9500621 (CpG methylation)   schema 
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 SRX9500622  CpG methylation  B-Lymphocyte / SRX9500622 (CpG methylation)   schema 
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 SRX9500623  CpG methylation  B-Lymphocyte / SRX9500623 (CpG methylation)   schema 
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 SRX9500624  CpG methylation  B-Lymphocyte / SRX9500624 (CpG methylation)   schema 
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 SRX9500626  CpG methylation  B-Lymphocyte / SRX9500626 (CpG methylation)   schema 
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 SRX9500627  CpG methylation  B-Lymphocyte / SRX9500627 (CpG methylation)   schema 
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 SRX9500628  CpG methylation  B-Lymphocyte / SRX9500628 (CpG methylation)   schema 
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 SRX9500629  CpG methylation  B-Lymphocyte / SRX9500629 (CpG methylation)   schema 
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 SRX9500630  CpG methylation  B-Lymphocyte / SRX9500630 (CpG methylation)   schema 
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 SRX9500631  CpG methylation  B-Lymphocyte / SRX9500631 (CpG methylation)   schema 
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 SRX9500632  CpG methylation  B-Lymphocyte / SRX9500632 (CpG methylation)   schema 
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 SRX9500633  CpG methylation  B-Lymphocyte / SRX9500633 (CpG methylation)   schema 
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 SRX9500634  CpG methylation  B-Lymphocyte / SRX9500634 (CpG methylation)   schema 
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 SRX9500635  CpG methylation  B-Lymphocyte / SRX9500635 (CpG methylation)   schema 
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 SRX9500637  CpG methylation  B-Lymphocyte / SRX9500637 (CpG methylation)   schema 
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 SRX9500638  CpG methylation  B-Lymphocyte / SRX9500638 (CpG methylation)   schema 
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 SRX9500639  CpG methylation  B-Lymphocyte / SRX9500639 (CpG methylation)   schema 
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 SRX9500640  CpG methylation  B-Lymphocyte / SRX9500640 (CpG methylation)   schema 
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 SRX9500641  CpG methylation  B-Lymphocyte / SRX9500641 (CpG methylation)   schema 
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 SRX9500642  CpG methylation  B-Lymphocyte / SRX9500642 (CpG methylation)   schema 
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 SRX9500643  CpG methylation  B-Lymphocyte / SRX9500643 (CpG methylation)   schema 
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 SRX9500644  CpG methylation  B-Lymphocyte / SRX9500644 (CpG methylation)   schema 
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 SRX9500645  CpG methylation  B-Lymphocyte / SRX9500645 (CpG methylation)   schema 
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 SRX9500646  CpG methylation  B-Lymphocyte / SRX9500646 (CpG methylation)   schema 
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 SRX9500648  CpG methylation  B-Lymphocyte / SRX9500648 (CpG methylation)   schema 
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 SRX9500649  CpG methylation  B-Lymphocyte / SRX9500649 (CpG methylation)   schema 
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 SRX9500653  CpG methylation  B-Lymphocyte / SRX9500653 (CpG methylation)   schema 
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 SRX9500654  CpG methylation  B-Lymphocyte / SRX9500654 (CpG methylation)   schema 
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 SRX9500655  CpG methylation  B-Lymphocyte / SRX9500655 (CpG methylation)   schema 
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 SRX9500656  CpG methylation  B-Lymphocyte / SRX9500656 (CpG methylation)   schema 
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 SRX9500657  CpG methylation  B-Lymphocyte / SRX9500657 (CpG methylation)   schema 
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 SRX9500659  CpG methylation  B-Lymphocyte / SRX9500659 (CpG methylation)   schema 
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 SRX9500660  CpG methylation  B-Lymphocyte / SRX9500660 (CpG methylation)   schema 
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 SRX9500661  CpG methylation  B-Lymphocyte / SRX9500661 (CpG methylation)   schema 
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 SRX9500662  CpG methylation  B-Lymphocyte / SRX9500662 (CpG methylation)   schema 
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 SRX9500663  CpG methylation  B-Lymphocyte / SRX9500663 (CpG methylation)   schema 
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 SRX9500664  CpG methylation  B-Lymphocyte / SRX9500664 (CpG methylation)   schema 
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 SRX9500665  CpG methylation  B-Lymphocyte / SRX9500665 (CpG methylation)   schema 
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 SRX9500668  CpG methylation  B-Lymphocyte / SRX9500668 (CpG methylation)   schema 
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 SRX9500670  CpG methylation  B-Lymphocyte / SRX9500670 (CpG methylation)   schema 
    

Study title: A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing
SRA: SRP047086
GEO: not found
Pubmed: not found

Experiment Label Methylation Coverage HMRs HMR size AMRs AMR size PMDs PMD size Conversion Title
SRX9500354 B-Lymphocyte 0.530 3.2 8968 26584.8 66 1155.5 1245 1314538.5 0.996 Methylome capture of HG001 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500355 B-Lymphocyte 0.533 3.5 10568 25483.4 107 1058.7 1281 1285775.3 0.996 Methylome capture of HG001 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500356 B-Lymphocyte 0.669 1.5 25475 2988.4 11 5857.1 406 2788956.0 0.996 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500357 B-Lymphocyte 0.670 1.5 26287 2952.5 13 1454.5 422 2726983.3 0.996 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500358 B-Lymphocyte 0.669 7.9 41094 2659.5 389 949.8 755 1843249.1 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500359 B-Lymphocyte 0.671 5.6 37258 2739.4 185 936.3 732 1883680.3 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500360 B-Lymphocyte 0.672 2.3 28916 2900.8 22 1171.2 505 2435681.4 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500362 B-Lymphocyte 0.672 2.3 28887 2893.3 21 1202.7 478 2498748.6 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500363 B-Lymphocyte 0.672 8.7 41540 2528.5 594 896.8 775 1808053.0 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500364 B-Lymphocyte 0.674 8.3 40597 2510.3 615 914.4 765 1823411.3 0.997 Methylome capture of HG002 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500367 B-Lymphocyte 0.567 5.0 29364 14350.0 58 1033.3 1040 1498592.2 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500368 B-Lymphocyte 0.569 4.6 28728 14353.1 51 1107.9 1016 1526177.3 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500369 B-Lymphocyte 0.567 3.5 26511 14036.6 31 1179.8 942 1621886.2 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500370 B-Lymphocyte 0.567 3.5 26228 13998.2 28 1087.1 955 1606390.5 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500371 B-Lymphocyte 0.566 13.1 43103 11043.5 638 965.8 816 1691969.5 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500374 B-Lymphocyte 0.570 12.9 43228 10961.5 683 973.0 868 1617367.8 0.997 Methylome capture of HG003 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500376 B-Lymphocyte 0.626 1.4 24789 4249.4 12 1310.2 600 2293032.5 0.997 Methylome capture of HG004 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500377 B-Lymphocyte 0.626 4.1 36320 6591.3 119 1390.2 864 1761817.6 0.997 Methylome capture of HG004 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500378 B-Lymphocyte 0.628 5.5 39070 6665.0 298 1198.4 921 1676530.3 0.997 Methylome capture of HG004 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500381 B-Lymphocyte 0.631 4.0 36603 6308.6 109 1502.7 863 1768774.7 0.997 Methylome capture of HG004 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500382 B-Lymphocyte 0.633 5.3 39134 6307.9 293 1234.7 896 1715750.6 0.997 Methylome capture of HG004 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500383 B-Lymphocyte 0.640 3.0 30858 5092.2 21 1157.0 839 1761640.0 0.996 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500385 B-Lymphocyte 0.640 3.1 31679 5115.9 22 1149.7 815 1801818.7 0.996 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500386 B-Lymphocyte 0.640 11.4 46632 5280.4 408 945.6 834 1704097.2 0.996 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500387 B-Lymphocyte 0.645 7.3 43602 5415.7 189 993.6 965 1567594.9 0.997 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500388 B-Lymphocyte 0.642 1.9 27829 4655.0 11 1520.3 708 1994275.7 0.996 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500389 B-Lymphocyte 0.643 2.0 27708 4652.1 7 1679.0 703 2002546.4 0.997 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500390 B-Lymphocyte 0.643 7.4 43110 5476.1 154 1004.4 1019 1512948.6 0.997 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500391 B-Lymphocyte 0.643 11.6 47350 5250.8 437 936.7 830 1701846.7 0.996 Methylome capture of HG005 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500392 B-Lymphocyte 0.659 2.1 26608 3643.6 10 1382.8 595 2248119.2 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500393 B-Lymphocyte 0.660 2.1 27367 3650.5 12 1383.4 623 2175619.1 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500394 B-Lymphocyte 0.660 7.6 39491 3180.7 163 1029.6 948 1617375.6 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500396 B-Lymphocyte 0.661 8.3 39566 3143.0 240 977.3 572 2174333.4 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500397 B-Lymphocyte 0.658 2.5 28581 3430.9 20 1219.5 625 2177621.1 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500398 B-Lymphocyte 0.659 2.6 29439 3457.3 23 1221.4 654 2108920.7 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500399 B-Lymphocyte 0.659 13.6 44610 3020.6 543 948.6 948 1600140.1 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500400 B-Lymphocyte 0.661 9.7 42428 2911.7 372 964.4 653 2020680.2 0.997 Methylome capture of HG006 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500401 B-Lymphocyte 0.666 3.9 31770 3254.6 63 1043.6 769 1888874.7 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500402 B-Lymphocyte 0.667 3.9 32948 3247.1 63 1148.4 819 1810086.4 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500403 B-Lymphocyte 0.667 19.0 48329 3095.5 1625 1060.2 603 2050446.6 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500404 B-Lymphocyte 0.666 8.5 40345 3025.8 622 1151.2 654 2008248.2 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500405 B-Lymphocyte 0.663 2.2 27323 3533.4 12 1507.9 617 2206329.0 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500407 B-Lymphocyte 0.664 2.2 27564 3484.9 12 1564.2 593 2249684.1 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500408 B-Lymphocyte 0.664 9.0 41497 3038.9 649 1101.8 675 1973997.0 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500409 B-Lymphocyte 0.669 14.2 46135 2999.2 1370 1071.1 575 2092353.8 0.997 Methylome capture of HG007 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500410 B-Lymphocyte 0.550 2.7 16638 10715.8 180 1084.9 877 1696513.2 0.986 Methylome capture of HG001 using TruSeq
SRX9500411 B-Lymphocyte 0.550 2.7 16601 10769.8 185 1110.2 906 1662577.8 0.986 Methylome capture of HG001 using TruSeq
SRX9500412 B-Lymphocyte 0.567 3.8 19575 10926.2 427 1077.4 947 1604743.2 0.986 Methylome capture of HG001 using TruSeq
SRX9500415 B-Lymphocyte 0.552 8.8 22168 15905.3 1043 1079.8 1120 1396194.0 0.987 Methylome capture of HG001 using TruSeq
SRX9500416 B-Lymphocyte 0.658 1.9 26789 2189.1 52 1177.6 35 198740.1 0.987 Methylome capture of HG002 using TruSeq
SRX9500418 B-Lymphocyte 0.659 1.9 26504 2187.7 48 1325.7 62 156990.6 0.987 Methylome capture of HG002 using TruSeq
SRX9500419 B-Lymphocyte 0.661 6.0 34189 1982.5 412 992.4 226 43440.6 0.987 Methylome capture of HG002 using TruSeq
SRX9500420 B-Lymphocyte 0.660 3.0 30366 2120.8 114 1103.2 70 80779.1 0.985 Methylome capture of HG002 using TruSeq
SRX9500421 B-Lymphocyte 0.660 3.1 29918 2122.8 123 1072.2 95 66785.7 0.985 Methylome capture of HG002 using TruSeq
SRX9500422 B-Lymphocyte 0.662 9.2 38414 1900.7 707 946.3 282 47414.4 0.985 Methylome capture of HG002 using TruSeq
SRX9500423 B-Lymphocyte 0.590 2.4 24186 5375.6 52 1380.9 587 2253232.4 0.985 Methylome capture of HG003 using TruSeq
SRX9500424 B-Lymphocyte 0.590 2.4 24177 5391.1 46 1441.7 558 2324301.3 0.986 Methylome capture of HG003 using TruSeq
SRX9500425 B-Lymphocyte 0.596 11.0 34074 8738.3 933 997.2 703 1930637.2 0.986 Methylome capture of HG003 using TruSeq
SRX9500426 B-Lymphocyte 0.594 3.7 25524 6202.2 197 1075.2 596 2206838.6 0.986 Methylome capture of HG003 using TruSeq
SRX9500427 B-Lymphocyte 0.594 3.7 26148 6274.4 192 1096.7 633 2115595.2 0.986 Methylome capture of HG003 using TruSeq
SRX9500429 B-Lymphocyte 0.592 7.5 31126 8873.7 556 1021.0 716 1917102.1 0.986 Methylome capture of HG003 using TruSeq
SRX9500432 B-Lymphocyte 0.630 5.7 31935 3889.4 735 1096.4 596 2245681.9 0.984 Methylome capture of HG004 using TruSeq
SRX9500433 B-Lymphocyte 0.628 3.6 28236 3541.9 351 1143.4 498 2523999.7 0.986 Methylome capture of HG004 using TruSeq
SRX9500434 B-Lymphocyte 0.629 3.6 27863 3542.2 365 1133.7 517 2471744.4 0.986 Methylome capture of HG004 using TruSeq
SRX9500435 B-Lymphocyte 0.631 10.2 36298 4314.2 1192 1104.8 380 2800212.9 0.986 Methylome capture of HG004 using TruSeq
SRX9500436 B-Lymphocyte 0.636 3.4 27816 3051.2 86 1159.2 540 2339456.2 0.986 Methylome capture of HG005 using TruSeq
SRX9500437 B-Lymphocyte 0.637 3.4 27298 3058.5 91 1182.0 529 2378195.4 0.986 Methylome capture of HG005 using TruSeq
SRX9500438 B-Lymphocyte 0.638 10.1 36050 3431.0 313 994.4 681 1985503.5 0.985 Methylome capture of HG005 using TruSeq
SRX9500440 B-Lymphocyte 0.636 2.4 26515 2936.6 56 1100.7 441 2642993.3 0.987 Methylome capture of HG005 using TruSeq
SRX9500441 B-Lymphocyte 0.637 2.4 25605 2917.0 54 1146.7 473 2549410.1 0.987 Methylome capture of HG005 using TruSeq
SRX9500442 B-Lymphocyte 0.639 7.9 34269 3368.8 268 1036.1 541 2270353.0 0.986 Methylome capture of HG005 using TruSeq
SRX9500445 B-Lymphocyte 0.653 17.3 41383 2096.2 512 1034.6 403 2588248.8 0.986 Methylome capture of HG006 using TruSeq
SRX9500446 B-Lymphocyte 0.652 6.5 32927 2137.9 246 1108.4 451 2578973.2 0.985 Methylome capture of HG006 using TruSeq
SRX9500447 B-Lymphocyte 0.652 6.5 33504 2136.8 258 1090.2 485 2481472.6 0.986 Methylome capture of HG006 using TruSeq
SRX9500448 B-Lymphocyte 0.656 5.0 31533 2197.1 168 1114.2 165 63297.5 0.985 Methylome capture of HG006 using TruSeq
SRX9500449 B-Lymphocyte 0.659 4.6 30380 2085.9 466 1076.1 112 47011.2 0.986 Methylome capture of HG007 using TruSeq
SRX9500451 B-Lymphocyte 0.660 4.6 29883 2109.4 484 1081.9 160 43001.7 0.986 Methylome capture of HG007 using TruSeq
SRX9500452 B-Lymphocyte 0.661 13.5 39895 1978.4 1259 1081.0 530 2270694.8 0.987 Methylome capture of HG007 using TruSeq
SRX9500455 B-Lymphocyte 0.661 5.3 31695 2058.3 608 1095.7 164 40814.3 0.986 Methylome capture of HG007 using TruSeq
SRX9500456 B-Lymphocyte 0.483 26.1 52937 12515.1 1680 1070.3 1520 1081477.9 0.996 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500458 B-Lymphocyte 0.478 5.5 8621 34062.3 119 1040.3 1319 1229429.4 0.993 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500459 B-Lymphocyte 0.483 9.5 25828 19249.2 777 1097.2 1357 1192051.5 0.994 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500463 B-Lymphocyte 0.619 10.0 46395 5740.1 1020 1137.2 834 1738910.7 0.997 Methylome capture of HG004 using EMSeq with 100ng of input DNA
SRX9500464 B-Lymphocyte 0.610 13.2 47658 5404.9 1729 1074.0 675 1920646.5 0.998 Methylome capture of HG004 using EMSeq with 100ng of input DNA
SRX9500465 B-Lymphocyte 0.610 19.1 51263 5223.9 2368 1066.7 700 1883879.9 0.998 Methylome capture of HG004 using EMSeq with 100ng of input DNA
SRX9500466 B-Lymphocyte 0.632 10.6 46982 5073.9 438 972.6 935 1576134.1 0.994 Methylome capture of HG005 using EMSeq with 10ng of input DNA
SRX9500467 B-Lymphocyte 0.629 15.4 50660 4840.1 632 946.0 728 1814011.5 0.997 Methylome capture of HG005 using EMSeq with 50ng of input DNA
SRX9500468 B-Lymphocyte 0.625 16.3 49521 4901.5 730 916.1 742 1786708.9 0.997 Methylome capture of HG005 using EMSeq with 100ng of input DNA
SRX9500470 B-Lymphocyte 0.612 17.8 49523 4431.9 1345 906.4 724 1781193.2 0.998 Methylome capture of HG005 using EMSeq with 10ng of input DNA
SRX9500471 B-Lymphocyte 0.620 16.1 50363 4551.1 1056 898.4 741 1768438.7 0.998 Methylome capture of HG005 using EMSeq with 50ng of input DNA
SRX9500472 B-Lymphocyte 0.615 15.1 49030 4526.7 1021 917.9 727 1785949.4 0.998 Methylome capture of HG005 using EMSeq with 100ng of input DNA
SRX9500473 B-Lymphocyte 0.650 13.7 45217 3027.5 663 930.7 634 1986570.8 0.993 Methylome capture of HG006 using EMSeq with 10ng of input DNA
SRX9500475 B-Lymphocyte 0.651 12.0 44036 2767.0 537 950.6 599 2041280.0 0.996 Methylome capture of HG006 using EMSeq with 50ng of input DNA
SRX9500476 B-Lymphocyte 0.648 12.9 43986 2776.3 593 968.1 592 2050100.2 0.997 Methylome capture of HG006 using EMSeq with 100ng of input DNA
SRX9500478 B-Lymphocyte 0.639 26.7 49790 2988.5 1353 911.0 706 1831991.4 0.997 Methylome capture of HG006 using EMSeq with 10ng of input DNA
SRX9500479 B-Lymphocyte 0.645 14.3 44836 2684.2 887 917.6 632 1956900.1 0.998 Methylome capture of HG006 using EMSeq with 50ng of input DNA
SRX9500480 B-Lymphocyte 0.620 20.8 48620 2288.4 1360 895.3 880 1412335.7 0.995 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500481 B-Lymphocyte 0.609 4.9 32809 2977.3 88 1033.2 422 2554908.7 0.992 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500482 B-Lymphocyte 0.613 11.6 42154 2361.5 809 898.9 860 1445967.0 0.993 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500483 B-Lymphocyte 0.535 14.9 43664 10153.5 778 946.0 770 1724984.6 0.996 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500484 B-Lymphocyte 0.528 8.5 30957 12962.1 227 973.6 778 1771622.2 0.994 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500485 B-Lymphocyte 0.534 8.7 34005 12310.7 363 960.5 751 1806539.7 0.994 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500486 B-Lymphocyte 0.586 19.0 48167 5101.6 1426 1109.3 607 2035301.6 0.996 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500487 B-Lymphocyte 0.577 5.8 36017 7309.0 207 1273.2 708 1951198.9 0.993 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500488 B-Lymphocyte 0.581 7.6 38729 6468.6 522 1175.3 600 2101216.0 0.994 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500489 B-Lymphocyte 0.591 14.3 46654 4385.6 466 957.0 634 1927076.1 0.997 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500490 B-Lymphocyte 0.583 8.2 39210 5245.1 183 1076.9 631 1979754.9 0.992 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500491 B-Lymphocyte 0.587 10.6 43148 4608.7 456 927.2 637 1888803.7 0.993 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500493 B-Lymphocyte 0.614 13.5 42705 2516.7 483 960.1 557 2084298.1 0.996 Methylome capture of HG006 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500494 B-Lymphocyte 0.611 15.0 44135 2612.3 531 954.4 639 1917653.0 0.995 Methylome capture of HG006 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500495 B-Lymphocyte 0.618 14.8 42234 2548.1 1124 1056.0 631 1904478.2 0.995 Methylome capture of HG007 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500496 B-Lymphocyte 0.615 23.0 46156 2747.6 1613 1045.4 605 1950334.4 0.993 Methylome capture of HG007 using TrueMethyl oxidative bisulite sequencing, mockBS replicate
SRX9500497 B-Lymphocyte 0.487 22.8 49976 13200.4 1397 1120.6 1516 1082058.1 0.995 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500498 B-Lymphocyte 0.479 4.8 6642 38174.6 83 1171.1 1286 1252106.1 0.994 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500499 B-Lymphocyte 0.489 11.1 30447 17454.8 846 1060.7 1288 1204905.1 0.994 Methylome capture of HG001 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500500 B-Lymphocyte 0.614 5.3 33470 2646.9 79 1104.8 481 2386499.4 0.994 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500501 B-Lymphocyte 0.622 10.5 41475 2242.6 525 1001.7 461 2311456.5 0.995 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500502 B-Lymphocyte 0.610 4.6 31670 2950.7 61 1121.6 579 2182365.8 0.992 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500505 B-Lymphocyte 0.617 9.5 40100 2362.2 509 1024.0 507 2185792.6 0.994 Methylome capture of HG002 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500506 B-Lymphocyte 0.527 4.2 20514 16526.9 33 1052.0 925 1619293.1 0.994 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500507 B-Lymphocyte 0.537 5.9 27218 14416.4 100 1159.9 909 1622546.2 0.995 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500508 B-Lymphocyte 0.527 4.6 20773 16043.3 39 1108.1 889 1651055.6 0.995 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500509 B-Lymphocyte 0.536 7.2 29913 13159.6 194 1034.6 694 1901009.9 0.995 Methylome capture of HG003 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500510 B-Lymphocyte 0.576 2.6 27411 7075.7 18 1203.2 656 2118680.5 0.995 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500511 B-Lymphocyte 0.586 10.8 42907 5596.6 795 1176.0 560 2132429.8 0.996 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500512 B-Lymphocyte 0.576 5.2 34358 7342.0 149 1409.9 643 2078475.9 0.994 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500513 B-Lymphocyte 0.584 7.4 39048 6463.6 489 1198.2 590 2120250.2 0.994 Methylome capture of HG004 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500514 B-Lymphocyte 0.586 5.0 34096 5826.8 53 1291.1 733 1862330.6 0.995 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500516 B-Lymphocyte 0.593 7.7 39345 4836.4 196 1068.3 638 1976600.3 0.996 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500517 B-Lymphocyte 0.582 3.7 31938 6400.1 26 1221.9 668 1994401.8 0.994 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500518 B-Lymphocyte 0.587 9.7 41531 4487.7 354 960.1 670 1904855.8 0.994 Methylome capture of HG005 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500519 B-Lymphocyte 0.615 15.8 43479 2618.8 490 935.3 559 2071523.0 0.995 Methylome capture of HG006 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500520 B-Lymphocyte 0.607 4.5 31392 3462.4 56 1046.5 676 2025887.9 0.994 Methylome capture of HG006 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500521 B-Lymphocyte 0.613 4.7 31288 3180.2 69 1174.1 682 2010824.8 0.994 Methylome capture of HG006 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500522 B-Lymphocyte 0.618 12.0 40944 2466.0 918 1075.0 657 1860825.2 0.994 Methylome capture of HG007 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500523 B-Lymphocyte 0.610 4.5 30484 3244.9 65 1100.5 495 2390477.2 0.992 Methylome capture of HG007 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500524 B-Lymphocyte 0.615 4.2 29990 3200.7 108 966.5 611 2136898.4 0.993 Methylome capture of HG007 using TrueMethyl oxidative bisulite sequencing, oxidative replicate
SRX9500585 B-Lymphocyte 0.518 11.8 38940 15918.6 1209 1062.4 1576 1052474.8 0.997 Methylome capture of HG001 using EMSeq with 100ng of input DNA
SRX9500586 B-Lymphocyte 0.518 11.7 39432 15874.5 1166 1068.9 1519 1079574.5 0.997 Methylome capture of HG001 using EMSeq with 100ng of input DNA
SRX9500587 B-Lymphocyte 0.510 15.8 46185 13804.7 2189 1049.6 1470 1101367.0 0.998 Methylome capture of HG001 using EMSeq with 100ng of input DNA
SRX9500589 B-Lymphocyte 0.522 13.4 44971 14533.4 1566 1060.9 1568 1057455.7 0.999 Methylome capture of HG001 using EMSeq with 100ng of input DNA
SRX9500590 B-Lymphocyte 0.658 13.6 46549 2429.4 1309 938.8 661 1837158.6 0.997 Methylome capture of HG002 using EMSeq with 100ng of input DNA
SRX9500591 B-Lymphocyte 0.659 12.7 45554 2425.3 1137 892.0 706 1759751.0 0.997 Methylome capture of HG002 using EMSeq with 100ng of input DNA
SRX9500592 B-Lymphocyte 0.645 13.8 45840 2349.4 1623 896.8 748 1646361.6 0.998 Methylome capture of HG002 using EMSeq with 100ng of input DNA
SRX9500593 B-Lymphocyte 0.643 13.7 45666 2358.6 1627 908.9 833 1535499.0 0.998 Methylome capture of HG002 using EMSeq with 100ng of input DNA
SRX9500594 B-Lymphocyte 0.568 13.9 45176 10343.3 946 943.0 820 1683683.4 0.997 Methylome capture of HG003 using EMSeq with 100ng of input DNA
SRX9500595 B-Lymphocyte 0.569 13.0 44094 10518.1 845 1003.7 823 1684900.6 0.997 Methylome capture of HG003 using EMSeq with 100ng of input DNA
SRX9500596 B-Lymphocyte 0.559 13.4 43957 10130.5 1288 916.7 854 1620051.7 0.998 Methylome capture of HG003 using EMSeq with 100ng of input DNA
SRX9500597 B-Lymphocyte 0.559 14.4 45063 9949.2 1422 942.0 842 1634568.0 0.998 Methylome capture of HG003 using EMSeq with 100ng of input DNA
SRX9500598 B-Lymphocyte 0.616 11.1 47916 5974.0 1128 1138.4 682 1926602.3 0.997 Methylome capture of HG004 using EMSeq with 100ng of input DNA
SRX9500599 B-Lymphocyte 0.642 15.3 45510 2717.4 889 917.1 598 2011798.6 0.998 Methylome capture of HG006 using EMSeq with 100ng of input DNA
SRX9500600 B-Lymphocyte 0.662 13.5 44221 2812.8 1397 1072.4 588 2058821.4 0.995 Methylome capture of HG007 using EMSeq with 10ng of input DNA
SRX9500602 B-Lymphocyte 0.656 12.9 44428 2762.2 1416 1061.8 682 1890105.0 0.997 Methylome capture of HG007 using EMSeq with 50ng of input DNA
SRX9500603 B-Lymphocyte 0.653 12.7 44182 2730.2 1367 1068.2 616 2014621.4 0.997 Methylome capture of HG007 using EMSeq with 100ng of input DNA
SRX9500604 B-Lymphocyte 0.641 24.7 48887 2860.6 2699 1025.5 721 1797844.2 0.997 Methylome capture of HG007 using EMSeq with 10ng of input DNA
SRX9500605 B-Lymphocyte 0.649 15.7 45650 2707.0 1910 1040.2 654 1902303.2 0.998 Methylome capture of HG007 using EMSeq with 50ng of input DNA
SRX9500607 B-Lymphocyte 0.644 15.9 44623 2740.0 1935 1042.8 613 1976587.1 0.998 Methylome capture of HG007 using EMSeq with 100ng of input DNA
SRX9500620 B-Lymphocyte 0.520 3.3 8596 36756.9 36 1105.7 1434 1175933.7 0.983 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500621 B-Lymphocyte 0.520 3.4 9018 36159.1 28 1250.9 1405 1192155.4 0.983 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500622 B-Lymphocyte 0.523 12.4 39123 16782.0 1004 1076.8 1651 1019448.5 0.984 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500623 B-Lymphocyte 0.526 2.9 8377 36047.2 19 1286.5 1334 1238857.1 0.984 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500624 B-Lymphocyte 0.526 2.9 9174 34906.0 22 1295.8 1339 1235717.0 0.985 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500626 B-Lymphocyte 0.528 10.8 37268 16706.2 794 1085.3 1543 1070215.9 0.985 Methylome capture of HG001 using Accel-NGS Methyl-Seq
SRX9500627 B-Lymphocyte 0.667 4.9 34965 2539.1 108 1035.8 641 2036319.2 0.984 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500628 B-Lymphocyte 0.667 5.0 34406 2543.6 110 1126.1 657 2014603.3 0.984 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500629 B-Lymphocyte 0.670 18.8 52103 2359.7 1624 893.0 759 1699450.6 0.984 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500630 B-Lymphocyte 0.668 3.2 29634 2961.1 28 1434.4 636 2078180.6 0.984 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500631 B-Lymphocyte 0.669 3.2 30146 2961.3 36 1090.4 649 2059118.6 0.984 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500632 B-Lymphocyte 0.671 11.6 44904 2338.9 684 900.8 588 1984974.2 0.985 Methylome capture of HG002 using Accel-NGS Methyl-Seq
SRX9500633 B-Lymphocyte 0.576 4.1 30552 14149.3 37 1232.6 987 1554396.9 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500634 B-Lymphocyte 0.576 4.1 29715 14152.5 40 1200.6 1013 1523219.9 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500635 B-Lymphocyte 0.578 15.8 48611 10429.8 1030 958.7 992 1498184.4 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500637 B-Lymphocyte 0.576 4.3 30642 14239.5 59 1118.5 1082 1468490.5 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500638 B-Lymphocyte 0.576 4.3 31083 14222.9 49 1132.1 1117 1429368.7 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500639 B-Lymphocyte 0.578 15.2 46900 10250.2 848 953.9 952 1525579.3 0.984 Methylome capture of HG003 using Accel-NGS Methyl-Seq
SRX9500640 B-Lymphocyte 0.628 4.7 38462 6367.5 124 1459.5 820 1801621.9 0.983 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500641 B-Lymphocyte 0.629 4.8 39724 6388.4 137 1449.9 870 1738936.5 0.983 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500642 B-Lymphocyte 0.631 17.5 52190 5582.0 1493 1107.5 727 1864515.6 0.983 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500643 B-Lymphocyte 0.629 3.7 35961 6583.1 46 2234.3 825 1807256.9 0.984 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500644 B-Lymphocyte 0.629 3.8 36260 6602.6 59 1889.8 840 1784306.7 0.984 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500645 B-Lymphocyte 0.631 13.5 49429 5618.1 1115 1142.6 708 1884542.4 0.985 Methylome capture of HG004 using Accel-NGS Methyl-Seq
SRX9500646 B-Lymphocyte 0.637 4.1 34671 5385.9 44 1221.1 986 1561275.1 0.983 Methylome capture of HG005 using Accel-NGS Methyl-Seq
SRX9500648 B-Lymphocyte 0.637 4.2 36627 5436.6 45 1237.4 992 1556751.7 0.983 Methylome capture of HG005 using Accel-NGS Methyl-Seq
SRX9500649 B-Lymphocyte 0.640 15.0 50893 5009.8 466 948.0 845 1657599.6 0.984 Methylome capture of HG005 using Accel-NGS Methyl-Seq
SRX9500653 B-Lymphocyte 0.659 3.7 31135 3280.6 40 1142.4 785 1851529.4 0.984 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500654 B-Lymphocyte 0.659 3.8 31215 3255.8 28 1311.0 756 1894629.5 0.984 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500655 B-Lymphocyte 0.661 14.0 45952 2858.3 447 967.4 642 1977899.4 0.984 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500656 B-Lymphocyte 0.659 4.1 32471 3236.4 34 1183.7 788 1846796.4 0.985 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500657 B-Lymphocyte 0.659 4.1 32866 3219.2 44 1130.0 840 1765807.6 0.985 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500659 B-Lymphocyte 0.662 14.9 46730 2862.1 464 962.9 621 2007402.9 0.985 Methylome capture of HG006 using Accel-NGS Methyl-Seq
SRX9500660 B-Lymphocyte 0.665 2.9 28953 3324.3 20 1363.5 699 2015392.4 0.983 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500661 B-Lymphocyte 0.665 2.9 29165 3314.7 24 1182.0 706 1992921.6 0.983 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500662 B-Lymphocyte 0.666 14.8 46229 2837.4 1292 1050.6 715 1852253.7 0.984 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500663 B-Lymphocyte 0.664 3.9 32268 3043.6 59 1137.9 823 1807058.5 0.983 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500664 B-Lymphocyte 0.665 4.0 32070 3039.4 63 1082.0 839 1776733.7 0.984 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500665 B-Lymphocyte 0.667 10.8 41931 2657.9 813 1059.2 595 2041138.2 0.983 Methylome capture of HG007 using Accel-NGS Methyl-Seq
SRX9500668 B-Lymphocyte 0.530 4.0 10602 27077.9 125 1048.3 1303 1267427.8 0.996 Methylome capture of HG001 using SPlinted Ligation Adapter Tagging (SPLAT)
SRX9500670 B-Lymphocyte 0.533 3.4 9445 26577.0 93 1164.1 1269 1297210.0 0.996 Methylome capture of HG001 using SPlinted Ligation Adapter Tagging (SPLAT)

Methods

All analysis was done using a bisulfite sequnecing data analysis pipeline DNMTools developed in the Smith lab at USC.

Mapping reads from bisulfite sequencing: Bisulfite treated reads are mapped to the genomes with the abismal program. Input reads are filtered by their quality, and adapter sequences in the 3' end of reads are trimmed. This is done with cutadapt. Uniquely mapped reads with mismatches/indels below given threshold are retained. For pair-end reads, if the two mates overlap, the overlapping part of the mate with lower quality is discarded. After mapping, we use the format command in dnmtools to merge mates for paired-end reads. We use the dnmtools uniq command to randomly select one from multiple reads mapped exactly to the same location. Without random oligos as UMIs, this is our best indication of PCR duplicates.

Estimating methylation levels: After reads are mapped and filtered, the dnmtools counts command is used to obtain read coverage and estimate methylation levels at individual cytosine sites. We count the number of methylated reads (those containing a C) and the number of unmethylated reads (those containing a T) at each nucleotide in a mapped read that corresponds to a cytosine in the reference genome. The methylation level of that cytosine is estimated as the ratio of methylated to total reads covering that cytosine. For cytosines in the symmetric CpG sequence context, reads from the both strands are collapsed to give a single estimate. Very rarely do the levels differ between strands (typically only if there has been a substitution, as in a somatic mutation), and this approach gives a better estimate.

Bisulfite conversion rate: The bisulfite conversion rate for an experiment is estimated with the dnmtools bsrate command, which computes the fraction of successfully converted nucleotides in reads (those read out as Ts) among all nucleotides in the reads mapped that map over cytosines in the reference genome. This is done either using a spike-in (e.g., lambda), the mitochondrial DNA, or the nuclear genome. In the latter case, only non-CpG sites are used. While this latter approach can be impacted by non-CpG cytosine methylation, in practice it never amounts to much.

Identifying hypomethylated regions (HMRs): In most mammalian cells, the majority of the genome has high methylation, and regions of low methylation are typically the interesting features. (This seems to be true for essentially all healthy differentiated cell types, but not cells of very early embryogenesis, various germ cells and precursors, and placental lineage cells.) These are valleys of low methylation are called hypomethylated regions (HMR) for historical reasons. To identify the HMRs, we use the dnmtools hmr command, which uses a statistical model that accounts for both the methylation level fluctations and the varying amounts of data available at each CpG site.

Partially methylated domains: Partially methylated domains are large genomic regions showing partial methylation observed in immortalized cell lines and cancerous cells. The pmd program is used to identify PMDs.

Allele-specific methylation: Allele-Specific methylated regions refers to regions where the parental allele is differentially methylated compared to the maternal allele. The program allelic is used to compute allele-specific methylation score can be computed for each CpG site by testing the linkage between methylation status of adjacent reads, and the program amrfinder is used to identify regions with allele-specific methylation.

For more detailed description of the methods of each step, please refer to the DNMTools documentation.