Affy U74 Track Settings
 
Alignments of Affymetrix Consensus Sequences from MG-U74 v2 (A,B, and C)   (All Expression and Regulation tracks)

Display mode:   

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
View table schema
Data last updated: 2007-09-10

Description

This track shows the location of the consensus sequences used for the selection of probes on the Affymetrix MG-U74v2 set (A,B and C) of chips.

Methods

Consensus sequences were downloaded from the Affymetrix Product Support and mapped to the genome with blat followed by pslReps using the parameters -minCover=0.3, -minAli=0.95 and -nearTop=0.005.

Credits

Thanks to Affymetrix for the data underlying this track.