Control track and group visibility more selectively below.
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| Human methylome studies... |
| Human methylome studies |
| SRP304130 |
| Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders [Sperm] |
| SRP056911 |
| DNA methylation in the placentas of typically developing and autistic children [Placenta] |
| SRP299418 |
| cell-free DNA sequencing of plasma [Plasma] |
| SRP298508 |
| Alternative splicing and the epigenome in CML remission [WGBS] [PBMCs] |
| SRP298022 |
| DNA hydroxymethylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle Cells] |
| SRP298020 |
| DNA methylation analysis for target regions in human smooth muscle cells. [Cultured Smooth Muscle Cells] |
| SRP293255 |
| DNA Methylation Potential Energy Landscape Analysis of Pediatric Pre-B cell Acute Lymphoblastic Leukemia (ALL) and Normal B cells and precursors [Cell Line, Primary] |
| SRP047086 |
| A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte] |
| SRP193431 |
| Early detection of lung cancer by deep methylation sequencing of circulating tumor DNA [Plasma] |
| SRP286409 |
| H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, HeLa] |
| SRP286271 |
| Homo sapiens Raw sequence reads [Cervical Cancer Adjacent Tissue, Cervical Cancer Tissue, Cervical Cells] |
| SRP286180 |
| Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality [Adjacent Normal, Tumour] |
| SRP282493 |
| DNA methylation maintains integrity of higher order genome architecture (WGBS) [HCT116] |
| SRP278588 |
| DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC [Induced Pluripotent Stem Cell, Induced Pluripotent Stem Cell Derived] |
| SRP278376 |
| Epigenetic Landscape of Pediatric Ependymoma Recurrence [Brain] |
| SRP266653 |
| TNF induced inflammatory transcription dynamics and epigenetic changes [HEK 293 Transfected With Reporter Construct] |
| SRP055494 |
| BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) [Modified B Cell (Lymphoblastoid)] |
| SRP273813 |
| Whole genome methylation sequencing of circulating tumor cells (CTCs) in Lung cancer. [Adjacent Normal Tissue, Blood, Lung] |
| SRP272595 |
| WGBS analysis of various colon cancer cell lines [Colorectal Adenocarcinoma] |
| SRP272481 |
| GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program [Bisulfite-Seq] [585B1 hiPSCs] |
| SRP271639 |
| Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes [WGBS] [Plasma] |
| SRP268783 |
| Acute depletion of CTCF rewires genome-wide chromatin accessibility |
| SRP267967 |
| Characterization of universal features of partially methylated domains across tissues and species [Breast Tumor, Lung] |
| SRP267867 |
| Human ribosomal DNA (rDNA) epigenetic clock [Whole Blood] |
| SRP057098 |
| A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development [Gonad] |
| SRP052842 |
| Pleiotropic Analysis of Lung Cancer and Blood Triglycerides [Purified AT2 Cells] |
| SRP266759 |
| DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [BS] [MCF7, SK-MEL-28] |
| SRP266187 |
| Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation [Lateral Amygdala (Brain Tissue)] |
| SRP265926 |
| 2-hydroxyglutarate drives whole-genome hypermethylation in kidney cancer cells with inactivated VHL [Caki1 Cell Line, Wildtype VHL, Clone12, Exogenous Wildtype VHL Reintroduced, Clone30, Exogenous Wildtype VHL Reintroduced, Clone44, Exogenous Wildtype VHL Reintroduced, VHL Inactivated, Clone12, VHL Inactivated, Clone30, VHL Inactivated, Clone44] |
| SRP261643 |
| Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity [In Vitro Differentiated AT1-like Cells, Purified Primary AT2 Cells] |
| SRP261501 |
| Tissue-Biased Expansion of DNMT3A-Mutant Clones Associated with Conserved Epigenetic Alterations [CD34+ HSPCs] |
| SRP260840 |
| Naïve human embryonic stem cells can give rise to cells with trophoblast-like transcriptome and methylome [Bisulfite-Seq] [Embryonic Stem Cells, Transdifferentiated Trophoblast Stem Cells, Trophoblast Stem Cells] |
| SRP259369 |
| Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma |
| SRP259185 |
| Multi-omics analysis reveals divergent epigenetic regulation of gene expression and drivers of esophageal squamous cell carcinoma (WGBS) [Adjacent Normal Esophageal Tissue, Esophageal Squa Carcinoma] |
| SRP051367 |
| Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq) [Monocyte-derived Dendritic Cells] |
| SRP051366 |
| Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq) [Monocyte-derived Dendritic Cells] |
| SRP254660 |
| H3K27M in Gliomas Causes a One-step Decrease in H3K27 Methylation and Reduced Spreading Within the Constraints of H3K36 Methylation [WGBS] [BT245, G477, HSJ-019, SU-DIPGXIII] |
| SRP253922 |
| Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [Bisulfite-seq] [585B1-BTAG] |
| SRP253848 |
| LiBis: An ultrasensitive alignment method for low-input bisulfite sequencing [Blood, Tumor] |
| SRP251688 |
| Signalling networks constructed by integrative analysis of multi-omics in peripheral blood mononuclear cells in systemic lupus erythematous patients [PBMCs] |
| SRP250803 |
| Genome-wide R-loop landscapes during epigenetic programming and reprogramming [Embryonic Stem Cells, Induced Pluripotent Stem Cells, Mesenchymal Stem Cell, Neural Stem Cells, Vascular Endothelial Cells, Vascular Smooth Muscle Cells] |
| SRP246939 |
| Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T Cells, Polyclonal Naive CD8 T Cell HD, Polyclonal T1D Naive CD8 T Cells, Polyclonal TCM CD8 T Cells, Polyclonal TEM CD8 T Cells, Polyclonal TSCM CD8 T Cells, Tetramer+ CD8 T Cells, Tetramer+ HAART CD8 T Cells, Tetramer+ T1D CD8 T Cells] |
| SRP049985 |
| Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. [cKIT+ FACS Sort] |
| SRP049710 |
| Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer [Matched Normal, Tumor] |
| SRP049936 |
| DNA methylation in mammalian placentas [Cerebrum, Cordblood, Extraembryonic Membrane, Placenta, Trophoblasts] |
| SRP049782 |
| Targeted disruption of DNMT1, 3A and 3B in human embryonic stem cells [WGBS] [ES] |
| SRP239226 |
| Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [WGBS] [Embryonic Stem Cells] |
| SRP238023 |
| Reliable tumor detection using cerebrospinal fluid cell-free DNA methylomes in pediatric medulloblastoma [Cerebrospnial Fluid, Normal Cerebellum Tissue, Pediatric Medulloblastoma Tumr Tissue] |
| SRP237955 |
| Molecular atlas of fetal and adult human liver sinusoidal endothelial cells: a F8 secreting cell [methylation III] [Hepatic Sinusoidal Endothelial Cells] |
| SRP230221 |
| Chromatin dynamics reveal circadian control of human in vitro islet maturation [WGBS] [Primary Adult Alpha Cell, Primary Adult Beta Cell, hPSC-derived Beta Cell, hPSC-derived Definitive Endoderm, hPSC-derived Endocrine Progenitor, hPSC-derived Pancreatic Progenitor 1, hPSC-derived Pancreatic Progenitor 2, hPSC-derived Poly-Hormonal Cell] |
| SRP048896 |
| Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human acute myeloid leukemia cell lines. [AML] |
| SRP048844 |
| Genome-wide profiling of DNA methylation at single-base resolution based on MeDIP-bisulfite high-throughput sequencing and ridge regression (MethyC + MeDIP) [Ovarian Epithelial] |
| SRP048761 |
| Dissecting neural differentiation regulatory networks through epigenetic footprinting [ES-derived Neural Progenitor Cells] |
| SRP233253 |
| Comparison of EM-seq and WGBS results [B-Lymphocyte, Lung, Plasma] |
| SRP230793 |
| Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes [Umbilical Cord Blood] |
| SRP230618 |
| Differential DNA methylation profiles of HS ILAE type 1 in human temporal lobe epilepsy [Brain; Hippocampus] |
| SRP229996 |
| Stem and effector CD8 T-cells from human cancers [CD8 T-cell] |
| SRP226234 |
| An ExtendedCulture System that Supports Human Primordial Germ Cell-Like Cells Survival and Initiation of DNA Methylation Erasure [hESCs] |
| SRP224808 |
| Whole genome bisulfite sequencing of human spermatozoa reveals differentially methylated patterns from type 2 diabetic patients [Semen] |
| SRP045902 |
| Resetting Transcription Factor Control Circuitry Towards Ground State Pluripotency In Human [H9] |
| SRP223055 |
| Tibetan humans Raw sequence reads [Blood] |
| SRP223612 |
| Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [Bladder Cell Line, Blood, Bone Marrow, Brain, Breast (Primary Tissue), Breast Cell Line, Cell Line, Liver, Lymph Node, Placenta, Placenta, Maternal] |
| SRP221227 |
| Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction [iPSCs] |
| SRP220230 |
| Human, Chimpanzee, Gorilla, Orangutan, Macaque Epigenomics [LCL] |
| SRP220467 |
| Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target [Rb Organoids, Retinal Organoids] |
| SRP219798 |
| Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERa-Positive Breast Cancer Cells [MCF7 Cells] |
| SRP045269 |
| Global loss of DNA methylation uncovers intronic enhancers in genes [Colorectal Cancer Cell Line] |
| SRP217135 |
| Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing [WGBS] [CD4, Neutrophils, Whole Blood] |
| SRP217139 |
| Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation [CAF, MSC] |
| SRP215940 |
| The DNA methylomes of hyper-IgM syndrome type 2 B cells provide insights into the roles of activation-induced deaminase prior to the germinal center reaction [Naive B Cell, Non-Class-Switched Memory B Cells] |
| SRP213665 |
| The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [HEK293T_WGBS] [HEK293T] |
| SRP213117 |
| Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development [methylation] [AG Embryo_8-Cell, BI Embryo_8-Cell, PG Embryo_4-Cell, PG Embryo_8-Cell] |
| SRP043461 |
| The effects of the global loss of DNA methylation on the functional cancer epigenome (Bisulfite-seq) [DKO1, HCT116] |
| SRP198282 |
| Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [Embryonic Stem Cell, Epithelial Adenocarcinoma] |
| SRP199200 |
| CATACOMB: an endogenous inducible gene that antagonizes H3K27 methylation activity of Polycomb Repressive complex 2 via a H3K27M-like mechanism [HEK-293T] |
| SRP193843 |
| DNMT1 drives 4D genome rewiring during oncogene induced senescence [WI-38hTERT/GFP-RAF1-ER] |
| SRP198624 |
| Whole genome bisulfite sequencing of esophagus squamous cell carcinoma [Esophagus] |
| SRP194341 |
| Whole-exome, transcriptome and epigenome data for homo sapiens from normal to dysplasia to colorectal cancer [Colon] |
| SRP021039 |
| Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells [Induced Pluripotent Stem Cell] |
| SRP065930 |
| HX1 [Blood] |
| SRP193115 |
| ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome [THP-1 Monocyte] |
| SRP192966 |
| Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage [Monocytic Cell Line] |
| SRP028804 |
| The DNA methylation landscape of human early embryos [Liver] |
| SRP187153 |
| Comparison of methylome data generated with HiSeq X Ten and NovaSeq [IMR-90] |
| SRP041984 |
| Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [Fibroblast, Pluripotent] |
| SRP186642 |
| Genome-wide methyl-cytosine competition by DNMT and TET [ESCs, Embryonic Stem Cell, EpiSCs, HUES64, HUES8, HUES8 Embryonic Stem Cells, In Vitro Derived Motor Neurons] |
| SRP041828 |
| Comparison of nucleosome occupancy and chromatin states between normal and cancer cell lines [HMEC, MCF7, PC3, PrEC] |
| SRP041822 |
| Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels [Bisulfite-Seq] [Lymphoblastoid Cell Line] |
| SRP186275 |
| Bisulfite-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation [Peripheral Blood Neutrophils] |
| SRP186015 |
| Study of DNA methylation pattern in single basepair resolution in the human dopaminergic neurons [LUHMES Cell Line] |
| SRP185639 |
| DNMT3B has oncogenic activity but evidence suggests that it does not promote CIMP nor cooperate with activated BRAFV600E in human intestinal cancer. (WGBS) [Fetal Lung Fibroblasts] |
| SRP041720 |
| Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human neurological disorders (Bisulfite-Seq) [Brain Grey Matter] |
| SRP041718 |
| Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome [Primary Fibroblast] |
| SRP125992 |
| Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors [Fetal-Derived Neural Progenitor Cells (Sai)] |
| SRP175163 |
| Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation [786-O] |
| SRP174219 |
| Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [Bisulfite-Seq] [Breast] |
| SRP041025 |
| WGBS data of pediatric B-cell acute leukemias [Bone Marrow / Peripheral Blood] |
| SRP170543 |
| Impaired DNA methylation in oocytes with a mutation in KHDC3L causing recurrent hydatidiform mole [Embryo Day 6] |
| SRP168427 |
| Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [Embryonic Heart] |
| SRP167041 |
| Homo sapiens Epigenomics [Breast, Plasma] |
| SRP163251 |
| Rates of acquisition of de novo mutations in human pluripotent stem cells under different culture conditions [PSC] |
| SRP162996 |
| Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes [CD10+ CD19+ Cord Blood] |
| SRP038103 |
| Genome-wide methylation maps for untreated and Aza treated AML3 cells [AML3] |
| SRP037971 |
| Genome wide profiling of MBD2 binding [MCF-7 WT] |
| SRP161783 |
| Whole Genome Bisulfite Sequencing of Rett Syndrome and Control Human BA9 Cortex [Post-Mortem Brain] |
| SRP161745 |
| Human retinal pigment epithelium [Cultured Retinal Pigment Epithelum, Eye Tissue] |
| SRP158940 |
| N6-methyladenine DNA Modification in Glioblastoma [ChIP-seq, BiSulfite-seq, DIP-seq] [Patient Derived Glioblastoma Stem Cell] |
| SRP158895 |
| Comparison of methylome data obtained with rPBAT and tPBAT. [Fibroblast-Like Cell] |
| SRP158894 |
| Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten [Fibroblast-Like Cell] |
| SRP158409 |
| H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H Embryo-Derived Mesenchymal Progenitor Cells] |
| SRP158279 |
| Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [WGBS] [Breast Cancer Cells] |
| SRP156136 |
| MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [Colon, Spleen] |
| SRP035642 |
| The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [Whole genome bisulfite sequencing] [GM02316, GM02317, GM02456, GM02555] |
| SRP155006 |
| Epigenomic signatures in liver and blood of Wilson disease patients include hypermethylation of liver-specific enhancers [Liver, Whole Blood] |
| SRP151496 |
| Generation of FOXO3 engineered human stem cells with enhanced efficacy and safety [ECs, MSCs, TransMSCs, VSMCs] |
| SRP136499 |
| A genomic study of the contribution of DNA methylation to regulatory evolution in primates [Heart, Heart (Later Reclassified As Liver), Kidney, Liver, Lung] |
| SRP148683 |
| Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator [Preimplantation Embryo] |
| SRP126139 |
| G-quadruplex structures moulds the DNA methylome [HaCaT] |
| SRP144312 |
| Widespread transposable element-driven oncogene expression in cancers [Lung Cancer Cell Line] |
| SRP144098 |
| DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells [Embryonic Stem Cell] |
| SRP117084 |
| Transcription elongation regulates genome 3D structure [Monocyte Derived Macrophages (MDM)] |
| SRP033504 |
| Epigenome analysis of human epidermal samples with aging and sun exposure [Dermis] |
| SRP033491 |
| China_type_2_diebetes_family [Sample From] |
| SRP033283 |
| The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq) [Breast Cancer Cell Line] |
| SRP033252 |
| Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq] [Blood (B-cells), Brain, Brain (Grey Matter), Brain (White Matter), Breast, Colon, Liver, Lung, Placenta, Prostate] |
| SRP033201 |
| Homo sapiens Genome sequencing [Generic Sample From] |
| SRP133999 |
| Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [Bisulfite-Seq] [Blood, Subcutaneous Adipose, Visceral Adipose] |
| SRP133941 |
| Longitudinal Personal DNA Methylome Dynamics in a Human with a Chronic Condition [Peripheral Blood Mononuclear Cells] |
| SRP133910 |
| Homo sapiens Raw sequence reads [Blood, Lymphoblastoid Cell Line, Peripheral Blood] |
| SRP032354 |
| whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) [Embryonic Semi-Differentiated Kidley Cells, Modified HEK293 Cell Overexpressing BAHD1] |
| SRP132785 |
| Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile (WGBS data set) [Blood, Colon] |
| SRP132292 |
| Genetic determinants and epigenetic effects of pioneer factor binding [WGBS] [Immortalized BJ Foreskin Fibroblast Cell Line] |
| SRP131900 |
| Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [WGBS] [ALL Xenograft Cells] |
| SRP131790 |
| Whole Genome Bisulfite Sequencing of Autism and Control Human BA9 Cortex [Dorsal Lateral Prefrontal Cortex] |
| SRP131112 |
| Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots [RRBS] [Motile Semen] |
| SRP131087 |
| An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells [BiSulfite-seq] [Lung, Ovarian] |
| SRP130992 |
| Genome-wide Methylation in Cordblood CD4+ Cells from Newborns Exposed vs. Unexposed to Maternal Tobacco Smoke During Pregnancy [Cord Blood CD4+ Cells] |
| SRP130768 |
| Homo sapiens bisulfite and mRNA sequencing of blood T cells and LCM collected lung cells [Alveolar, Bronchial, T] |
| SRP128919 |
| DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors [Whole Organoid] |
| SRP127667 |
| Epigenetic marks and nuclear transcriptomes of cardiac myocytes [Cardiac Myocyte Nuclei, SIRPA+ Cardiac Myocytes] |
| SRP127273 |
| Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing. [Epithelial; B-Lymphocyte;Fibroblast] |
| SRP126972 |
| Distinct Epigenetic Subtypes Are Linked to Disease Progression in Low-Risk MDS [Peripheral Blood (PB) Cells] |
| SRP126677 |
| Genome-wide profiling at single-nucleotide resolution of brain cell types in schizophrenia [WGBS] [NeuN, Olig2] |
| SRP029519 |
| Induction of sarcomas by mutant IDH2 [10T Isogenic Cell Line With IDH2 Mutation] |
| SRP125973 |
| A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs [Cervical Cancer Cell Line] |
| SRP125826 |
| Intervals of unmethylated DNA spatially co-segregate in cis and in trans [WGBS] [Erythroid Progenitor Cells] |
| SRP028600 |
| Charting a dynamic DNA methylation landscape of the human genome [Colon Primary Tumor, Frontal Cortex Alzheimer, Frontal Cortex Normal, HepG2 Cell Line, IMR90 Immortalized Fibroblast Cell Line] |
| SRP028577 |
| Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] [Activated B-cells, Activated B-cells_day 16, Activated B-cells_week 3, EBV Transformed B-cells, EBV Transformed B-cells_16 Days Post Infection, EBV Transformed B-cells_3 Weeks Post Infection, Resting B-cells] |
| SRP113417 |
| Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Mature Sperm, Sperm, Spermatids, Spermatocytes, Spermatogonia, Spermatogonia (Thy1+)] |
| SRP119706 |
| DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs] [Adjacent Benign Normal Prostate, Prostate Tumor] |
| SRP026604 |
| Genome-wide methylation maps for Proliferating and Senescent cells [IMR-90] |
| SRP117159 |
| Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads [Liver] |
| SRP074598 |
| Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos [Heart, ICM, Sperm, TE, Villus] |
| SRP116948 |
| Whole genome bisulphite sequencing using the Illumina X system [Bisulfite-Seq] [EBV-transformed Lymphoblastoid Cell Line, Fetal Lung Fibroblast] |
| SRP124518 |
| UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons [Chromosome Duplication Model Of Dup15q Syndrome, Neuronal Cell Line] |
| SRP115074 |
| Lack of Repressive Capacity of Human Promoter DNA Methylation identified through Genome-Wide Epigenomic Manipulation [Brest Cancer Cell Line] |
| SRP026048 |
| Global epigenomic reconfiguration during mammalian brain development [Brain (Cerebral Cortex), Brain (Dorsal Prefrontal Cortex), Brain (Frontal Cortex), Brain (Middle Frontal Gyrus), Embryonic Stem Cells] |
| SRP107883 |
| Archaic and modern bone DNA methylation maps from the Neanderthal, Denisovan, modern human and chimpanzee [Bone] |
| SRP107857 |
| TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency [Naive Embryonic Stem Cell, Primed Embryonic Stem Cell] |
| SRP106910 |
| Human memory CD8 T-cell effector-potential is epigenetically preserved during in vivo homeostasis [HuTCM, HuTEM, HuTN, HuTSCM, TCMD204, TEMD203, TND201, TSD202] |
| SRP022182 |
| Homo sapiens Epigenomics [Generic Sample From] |
| SRP022160 |
| Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain [Brain Prefrontal Cortex] |
| SRP022149 |
| Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] [Normal Brain Tissue, Normal Liver Tissue, Normal Placenta Tissue] |
| SRP104789 |
| Culture of Human embryonic stem cells in different media [Embryonic Stem Cells] |
| SRP104305 |
| 5hmC dynamically correlated with enhancer''s activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) [ES Cells] |
| SRP104141 |
| NicE-seq: high resolution open chromatin profiling [HCT116] |
| SRP103943 |
| DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [WGBS] [Epithelial HEK 293T Cells] |
| SRP103839 |
| Single-cell Multi-omics Sequencing and Analyses of Human Colorectal Cancer [CRC, HeLa Contaminant] |
| SRP022041 |
| Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] [Normal Buccal Cells] |
| SRP103794 |
| Methylation DNA mediated KLF4 binding activity in glioblastoma cells [Glioblastoma Cells] |
| SRP021846 |
| Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] [Skin (Epidermal Suction Blister Samples)] |
| SRP021479 |
| Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) [Carotid Tissue] |
| SRP103077 |
| Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [Embryonic Stem Cells] |
| SRP102997 |
| Genome-wide nucleosome occupancy and DNA methylation profiling in endometriosis cells [hTERT Immortalized Endometriosis Cells] |
| SRP543819 |
| Seminal Plasma cell-free DNA [Seminal Plasma] |
| SRP101887 |
| Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] [Bulk Tissue, NeuN Neg, NeuN Pos] |
| SRP338680 |
| Molecular profile of HepG2 cell line (IBMC) [Liver] |
| SRP533334 |
| Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19 [Nasopharyngeal Swab] |
| SRP526064 |
| Valine-restricted diet regulates DNA methylation [Bisulfite-Seq] [HCT116] |
| SRP100067 |
| Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers |
| SRP099603 |
| Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome [Postmortem Brain Tissue] |
| SRP523710 |
| Rapid Human Oogonia-like Cell Specification via Combinatorial Transcription Factor-Directed Differentiation [BiSulfite-seq] [DDX4+ Induced Oogonia-Like Cells, DDX4+ Induced Oogonia-Like Cells (No DNMT1i), DDX4+ Induced Oogonia-Like Cells, Naive Reset, hPGCLC, hiPSC_naivereset, hiPSC_primed] |
| SRP521389 |
| Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by TAD-seq [Embryonic Kidney] |
| SRP098648 |
| Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [BiSulfite-seq] [Adult Brain Frontal Lobe, LNCaP Clone] |
| SRP519334 |
| sciMETv3 Single-cell DNA Methylation Raw Sequence Reads [BA46] |
| SRP097759 |
| S-adenosylhomocysteine hydrolase participates in DNA methylation inheritance [HEK293] |
| SRP510797 |
| Homo sapiens Raw sequence reads [Clear Renal Carcinoma Cells Caki1, Kaiso-deficient Caki1] |
| SRP515825 |
| Mitochondria-localized MBD2c facilitates mtDNA transcription and drug resistance [Bisulfite-Seq] [MDA-MB-468] |
| SRP515320 |
| Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer's disease [Isolated WBC] |
| SRP478956 |
| Divergent originations of parental DNA hydroxymethylation in human preimplantation embryos [Embryonic Stem Cells] |
| SRP514328 |
| DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS] [Embryonic Kidney] |
| SRP019232 |
| Whole genome bisulfite-seq of two healthy males. [Hair Follicle, Peripheral Blood Lymphocyte] |
| SRP001371 |
| University of Washington Human Reference Epigenome Mapping Project [Fetal Intestine, Large, Fetal Intestine, Small] |
| SRP511776 |
| Patient TSC2 Mutant Cells Exhibit Aberrations in Early Neurodevelopment Accompanied by Changes in the DNA Methylome (Bisulfite-Seq) [Induced Pluripotent Stem Cells (iPSC), iPSC-derived Neural Progenitor Cells] |
| SRP096028 |
| Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. [Dental Pulp Stem Cells, LUHMES] |
| SRP504106 |
| Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [human WGBS] [Tumor Cells] |
| SRP503688 |
| Genome-wide DNA methylation seq data and RNA seq data in three paired HCC and normal tissue samples [HCC Tissue, Paracancerous Tissue] |
| SRP095006 |
| Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA Methylation by dCas9 methyltransferases (CRISPRme) [WGBS] [Embryonic Kidney Cell Line] |
| SRP094960 |
| Genomic profiling of human spermatogonial stem cells [WGBS] [Spermatogonial Stem Cells] |
| SRP499337 |
| Repetitive element transcript accumulation is related to inflammaging in humans [PBMC] |
| SRP094721 |
| Epigenomic landscapes of hESC-derived neural rosettes [Neural Stem Cells] |
| SRP496763 |
| Charting the regulatory landscape of TP53 on transposable elements in cancer [WGBS] [SRS20802026, SRS20802027, SRS20802028, SRS20802029, SRS20802030, SRS20802031, SRS20802032, SRS20802033, SRS20802034, SRS20802035, SRS20802036, SRS20802037, SRS20802038, SRS20802039, SRS20802040, SRS20802041, SRS20802042, SRS20802043, SRS20802044, SRS20802045, SRS20802046, SRS20802047, SRS20802048, SRS20802049] |
| SRP094554 |
| A Molecular signature for Delayed Graft Function [BS-Seq] [Kidney] |
| SRP434804 |
| MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons [WGBS] [Neuron] |
| SRP494242 |
| Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th17 lymphocytes. [Lymphocyte] |
| SRP491820 |
| Cell-free DNA Methylation Patterns in Aging and Their Association with Inflamm-aging [Plasma] |
| SRP093764 |
| Epigenetic resetting of human pluripotency [ESC] |
| SRP490212 |
| UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation [BiSulfite-seq] [Colorectal Carcinoma Epithelial Cells] |
| SRP490076 |
| Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer's disease cases [BiSulfite-seq] [iPSC] |
| SRP093254 |
| Whole Genome Bisulfite Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs [HUES8 hESCs] |
| SRP485412 |
| PRC2-AgeIndex: a universal biomarker of aging and rejuvenation [WGBS] [Dermal Fibroblasts, Foreskin Fibroblasts] |
| SRP092462 |
| HUES8 TET1/2/3 TKO hESCs [Embryonic Stem Cells] |
| SRP473783 |
| scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells [Lymphoblast] |
| SRP092113 |
| Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing [ALL Cell Line, Lymphoblastoid Cell Line] |
| SRP474233 |
| Identification of differentially expressed tumour-related genes regulated by UHRF1 regulated DNA methylation [WGBS] [Breast Cancer Cell] |
| SRP470181 |
| Hypermethylation of DNA impairs megakaryogenesis in delayed platelet recovery after allogeneic hematopoietic stem cell transplantation [Hematopoietic Stem Cells, Megakaryocyte Progenitor Cells] |
| SRP467414 |
| DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells [CD8 T Cell] |
| SRP464289 |
| DNMT3B PWWP mutations cause hypermethylation of heterochromatin (WGBS) [Colorectal Cancer Cell Line] |
| SRP462543 |
| iPSC-based modeling of preeclampsia identifies defects in extravillous trophoblast differentiation [EVT, MSC, hTSC, iPSC] |
| SRP461724 |
| Endogenous retrovirus LTR12C hold potential locus-dependent activities as promoter and/or enhancer [BiSulfite-seq] [Embryonic Kidney] |
| SRP461642 |
| Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [Normal Pancreatic Ductal Organoid, PanIN Organoid, Pancreatic Ductal Adenocarcinoma Organoid] |
| SRP090105 |
| The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Hs] [Retina] |
| SRP089722 |
| Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling [WGBS] [Primary Prostate Epithelial Cells (PrEC), Prostate Cancer Cell Line (LNCaP)] |
| SRP456514 |
| A modular dCas9-based recruitment platform for combinatorial epigenome editing [Embyonic Kidney] |
| SRP454277 |
| Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling [WGBS] [Prostate Tumour] |
| SRP452335 |
| Epigenetic sequencing of allogeneic HSC-derived CAR-engineered NKT cells [BCAR-T, BCAR-iNKT, BCAR-iNKT-IL15] |
| SRP451599 |
| The effect of Histone H3.3 knockdown on DNA methylation in HepG2 cells [Hepatoma Cell] |
| SRP450683 |
| Epigenomic landscape of colorectal adenoma and cancer [Colorectal] |
| SRP450395 |
| Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer [WGBS] [Breast Cancer PDX Model Gar15-13, Breast Cancer PDX Model HCI005] |
| SRP446321 |
| Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells [Colorectal Cancer Cell] |
| SRP386415 |
| SELF-PATTERNING OF HUMAN STEM CELLS INTO POST-IMPLANTATION LINEAGES [Embryonic Stem Cell Line] |
| SRP441209 |
| Omics analyses of stromal cells from ACM patients reveal alterations in chromatin organization and mitochondrial homeostasis [Bisulfite-Seq] [Cardiac Mesenchymal Stromal Cells] |
| SRP441171 |
| Single-stranded Premethylated 5mC Adapters Uncovers the Methylation Profile of Plasma Ultrashort Single-Stranded Cell-Free DNA [Plasma] |
| SRP440514 |
| TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS] [Embryonic Kidney] |
| SRP439675 |
| NPC268 whole-genome bisulfite sequencing (WGBS) [Nasopharyngeal Carcinoma] |
| SRP341621 |
| LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA [Plasma Separated] |
| SRP436137 |
| Malignant Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci [WGBS] [Fibroblast] |
| SRP082156 |
| Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] [Cancer Associated Fibroblast, Normal Prostate Fibroblast] |
| SRP080893 |
| Active and senescent human hematopoietic stem and progenitor cell whole genome bisulfite sequencing [DNA] |
| SRP432935 |
| Epigenetic modification sequencing data of human U2OS cells [Epithelial Cell] |
| SRP080340 |
| Evidence That Three Classes of Methylomes Specific for Stem, Somatic and Transformed Cells Are Set by Three Independent Mechanisms (Methyl-Seq) [Basophilic Erythroblasts] |
| SRP430982 |
| Whole genome bisulfite sequencing data of blood cfDNA form 29 CRC and 9 Non-CRC patients. [Blood] |
| SRP426633 |
| DNA methylation alterations in prostate cancer patient derived xenograft models revealed by whole genome bisulfite sequencing [Patient Derived Xenograft] |
| SRP426514 |
| Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells [Astrocytes, Glioblastoma Stem Cell, Primary Dermal Fibroblast] |
| SRP424257 |
| Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] [Glioblastoma Tumor] |
| SRP423445 |
| Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [Plasma, Stem Cell, mESC] |
| SRP420728 |
| 5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells [methylation] [HEK293T] |
| SRP373598 |
| GM12878 MultiOmics [B-Lymphocyte] |
| SRP241842 |
| REH MultiOmics [B Cell Precursor Leukemia] |
| SRP415835 |
| Comprehensive sequence-based DNA methylation analysis suggests that PanIN lesions are acinar-derived and epigenetically primed for carcinogenesis [Acini, Ducts, PDAC Lesion, PanIN Lesion] |
| SRP404930 |
| LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [CD8 T Cell, Endo CD8 T Cell, P14 CD8 T Cell] |
| SRP076893 |
| “Same Difference”: Comprehensive evaluation of four DNA methylation measurement platforms [Lung Fibroblast] |
| SRP015742 |
| GSE40832: Whole Genome Bisulfite Sequencing by ENCODE/HAIB [Inner Cell Mass, Mesoderm] |
| SRP015704 |
| Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules [Glioblastoma, Lung Fiboblast Cells] |
| SRP409096 |
| Epigenetic dynamics during capacitation of naïve human pluripotent stem cells [PBAT] [Chemically Reset hPSC, Conventional hPSC, Embryo-Derived Naive hPSC] |
| SRP408041 |
| The catalytic activity of TET1 is required for human germ cell fate choice [Bisulfite-Seq] [hESC, hPGCLC] |
| SRP405928 |
| Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Brain, Breast Cancer Cell, Embryonic Kidney Cell, Embryonic Stem Cell, Hepatocarcinoma Cell, Lung Adenocarcinoma Cell, Melanoma Cell, Neuroblastoma Cell, Platelet] |
| SRP405874 |
| Rebalancing TGFß1/BMP Signals Preserves Effector and Memory Programs in Terminally Dysfunctional CD8+ T Cells [Bisulfite-Seq] [CD8+] |
| SRP075910 |
| Global delay in nascent strand DNA methylation [HCT116, HUES64 WT] |
| SRP075876 |
| Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain [Embryonic Stem Cell Line, Middle Frontal Gyrus] |
| SRP357194 |
| HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription [C33A, CaSki, HeLa, S12, SiHa] |
| SRP075562 |
| ZBTB33 (Kaiso) Differentially Regulates Cell Cycle Through cyclin D1 and cyclin E1 in a Cell Specific Manner [BiSulfite-seq] [HeLa] |
| SRP012412 |
| GSE59395: Genome-wide map of regulatory interactions in the human genome [A549, Adrenal Gland, Body Of Pancreas, Esophagus Muscularis Mucosa, Esophagus Squamous Epithelium, Fibroblast Of Arm, GM12878, Gastroesophageal Sphincter, HeLa-S3, Heart Left Ventricle, HepG2, Hepatocyte, K562, Lower Leg Skin, Mammary Epithelial Cell, Motor Neuron, OCI-LY7, Ovary, Prostate Gland, Right Lobe Of Liver, SK-N-SH, Smooth Muscle Cell, Spleen, Stomach, Suprapubic Skin, Testis, Thyroid Gland, Tibial Nerve, Transverse Colon, Upper Lobe Of Left Lung] |
| SRP014898 |
| Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) [Sperm] |
| SRP400466 |
| Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons (WGBS) [Embryonic Stem Cells] |
| SRP075292 |
| Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes. [Brain, Neuroblastoma Cell Line] |
| SRP396513 |
| Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [Embryonic Stem Cell, Purified Cardiomyocyte] |
| SRP398111 |
| to be updated [Blood] |
| SRP336573 |
| Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [Embryonic Stem Cells (mESCs), Leukemia Cell Line] |
| SRP397737 |
| Global hypermethylation of intestinal epithelial cells is a hallmark feature of neonatal surgical necrotizing enterocolitis [lcm_colon_ileum] [Epithelial] |
| SRP397676 |
| Loss of tight junctions disrupts gastrulation patterning and increases differentiation towards the germ cell lineage in human pluripotent stem cells [hiPSC] |
| SRP074852 |
| DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats [NCI-H1299-EGFP/NEO] |
| SRP396738 |
| Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (WGBS) [Adult Adipose Derived Mesenchymal Stromal Cells, Chemically Induced Pluripotent Stem Cells] |
| SRP396408 |
| Neonatal necrotizing enterocolitis-associated DNA methylation signatures in the colon are evident in stool samples of affected individuals [Colon Tissue, Stool] |
| SRP396192 |
| DNA Methylation Profile of Lip Tissue from Congenital Non-syndromic Cleft Lip and Palate Patients by Whole Genome Bisulfite Sequencing [Lip Tissue] |
| SRP395427 |
| WGBS-seq and oxWGBS-seq Atlas for Oral Squamous Cell Carcinoma [Normal Adjacent Tissue, OSCC Tissue] |
| SRP012560 |
| GSE34399: Replication Timing by Repli-seq from ENCODE/University of Washington [H1-hESC, Skeletal Muscle Myoblast] |
| SRP074177 |
| Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering [MCF-7 Cells (siFOXA1- Transfected), MCF-7 Cells (siNS- Transfected)] |
| SRP394454 |
| Methylation profile of latent metastatic (Lat-M) cells from clear cell renal cell carcinoma (ccRCC) [Kidney Cancer Cells] |
| SRP014634 |
| Examination of four human tissue samples by MethylC-seq [Placenta] |
| SRP049651 |
| Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [BS-Seq] [Liver Metastasis, Lung Metastasis, Normal Pancreas, Patient A38, Peritoneal Metastasis, Primary Tumor] |
| SRP392105 |
| Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta] |
| SRP389118 |
| Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation [WGBS] [Esophageal Adenocarcinoma, Esophageal Squamous Cell Carcinoma] |
| SRP387971 |
| Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion [CD4+ TCONV Cells, CD4+ TREG Cells] |
| SRP072141 |
| stem cell epigenomics [H1 Stem Cells] |
| SRP072078 |
| epigenomic analysis of lung and liver [Liver, Lung] |
| SRP072075 |
| Epigenomic analysis of lymphocytes and fibroblasts [Foreskin Fibroblasts, Sorted CD4+ T Cells] |
| SRP072071 |
| study of brain methylation [Brain, Pre-Frontal Cortex] |
| SRP071891 |
| Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq) [IVF Derived Embryonic Stem Cell, Polar Body Nuclear Transfer] |
| SRP387319 |
| Dysfunction of 5-methylcytosine oxidases and the Polycomb protein RYBP leads to widespread DNA hypermethylation and cell transformation [WGBS] [Bronchial Cells] |
| SRP387154 |
| Accurate simultaneous sequencing of genetic and epigenetic bases in DNA [B-Lymphocyte] |
| SRP071771 |
| Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] [Liver, Skeletal Muscle] |
| SRP304105 |
| Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability [MCF-7] |
| SRP384348 |
| Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ebryonic Stem Cells, Embryonic Kidney Cells, Ngn2_neurons] |
| SRP013816 |
| SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation [HeLa Cervical Carcinoma Cells] |
| SRP377560 |
| Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer. [LuCaP 77, LuCaP 78, LuCaP 93] |
| SRP376918 |
| Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes [B-Lymphocyte/ Embryonic Kidney/ Breast Cancer, Breast Cancer, Embryonic Kidney] |
| SRP068579 |
| Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory [5iLAF SSEA4 Negative UCLA1 EpiLC Day 0, 5iLAF SSEA4 Negative UCLA1 EpiLC Day 16, 5iLAF SSEA4+ Subpopulation UCLA1 hESCs, 5iLAF SSEA4- Subpopulation UCLA1 hESCs, 5iLAF SSEA4- Subpopulation UCLA20n hESCs, Primed SSEA4+ UCLA1 hESCs, Primed UCLA1 EpiLC Day 0, Primed UCLA1 EpiLC Day 16] |
| SRP330251 |
| Vitamin B12 regulates the transcriptomes of human ileal epithelial cells (iECs) [Ileum] |
| SRP375137 |
| DNMT3A-mediated DNA demethylation is required for hypoxia induced EMT of human cancer cells |
| SRP373924 |
| NOMe-Seq analysis of IMR-90 cell line II [IMR-90] |
| SRP373708 |
| WGBS of primary and recurrent ovarian cancer tumors with and without BRCA1/2 mutations [Ovarian Cancer Tumors] |
| SRP067779 |
| Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [NOMe-seq] |
| SRP323101 |
| RRBS-based quantitative methylation analysis define 100% methylation fidelity CpG sites [Epithelial Cells, Lymphocyte Cells] |
| SRP368308 |
| Lack of major genome-wide DNA methylation changes in succinate-treated human epithelial cells [Bronchial Cells] |
| SRP367891 |
| DNA methylation analysis of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma [Primary Culture, UM Sorted Cells] |
| SRP085035 |
| Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling] [Naive Embryonic Stem Cells, Primed Embryonic Stem Cells] |
| SRP364929 |
| human rDNA obesity [Blood] |
| SRP012499 |
| Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution [EBV Immortalized B Cells] |
| SRP362494 |
| The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (WGBS) [iPSCs] |
| SRP000996 |
| BI Human Reference Epigenome Mapping Project [Adult CD14, Adult CD3, Adult CD56, CD184+ Endoderm Cultured Cells, CD19, CD34 Primary Cells, Fetal Adrenal, Fetal Heart, Fetal Muscle, Leg, Fetal Muscle, Trunk, Fetal Placenta, Fetal Spinal Cord, Fetal Stomach, Fetal Thymus, Generic Sample From, IMR90 Cells] |
| SRP358957 |
| WGBS of OLD and YOUNG primary Fibroblasts [Fibroblast] |
| SRP353536 |
| Transcriptome and Bisulfite sequencing of drug treated breast cancer cell lines [Mammary Gland] |
| SRP012161 |
| Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains [Prefrontal Cortex] |
| SRP357372 |
| WGBS and RNA-seq of HUVECs transfected with siNC or siTET2 [Umbilical Vein Endothelial Cells] |
| SRP357363 |
| Whole-genome bisulfite sequencing anaysis of PSCs [Feeder-free PSC] |
| SRP356708 |
| Young vs Old Fibroblast WGBS [Skin] |
| SRP299802 |
| Acute lymphoblastic leukemia displays a distinct highly methylated genome [ALL-SIL, DND41, Jurkat, LOUCY, MHH-CALL-2, MHH-CALL-4, MOLT-16, MUTZ5, NALM-16, NALM-6, PEER, PER-117, RPMI-8402, TALL-1] |
| SRP353982 |
| methyl-Seq of Pediatric ARDS Nasal and Bronchial Brushings [Bronchial, Nasal] |
| SRP353670 |
| DNA Methylation Potential Energy Landscape Analysis of MLL-rearranged Acute Myeloid Leukemia (AML) and Normal hematopoietic precursors [WGBS] [Acute Myeloid Leukemia, GMP, HSC, L-MPP] |
| SRP353340 |
| NOMe-Seq analysis of IMR-90 cell line [IMR-90] |
| SRP353040 |
| WGBS of control and DAC-treated tumor tissue from PDX model [Colorectal Cancer] |
| SRP352189 |
| CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS] [B Cell] |
| SRP348645 |
| Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells [WGBS] [Immortalized Astrocyte Cells] |
| SRP346999 |
| Whole genome bilsufite sequencing of sgTET2 HepG2 [Missing] |
| SRP346828 |
| NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule [Lung Fibroblast Cell Line] |
| SRP011945 |
| Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [E14Tg2A, H1] |
| SRP011746 |
| Ultra-low-input, tagmentation-based whole genome bisulfite sequencing [GM20847: Gujarati Indian] |
| SRP345048 |
| Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation [WGBS] [Germ Cell Tumor] |
| SRP342964 |
| scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation [Lymphoblast Cell Line] |
| SRP339574 |
| Methylation Mediated Silencing of Protein Kinase C Zeta Induces Apoptosis Avoidance through ATM/Chk-2 Inactivation in Dedifferentiated Chondrosarcoma [Chondrosarcoma Cell Line] |
| SRP338853 |
| DNA methylation of MOLM-13 cells [AML, Cell Line] |
| SRP338189 |
| Deleting DNMT3A in CAR T cells prevents exhaustion and 1 enhances antitumor activity [T Cells] |
| SRP337501 |
| DNA methylation landscape and signature of CD4+ lymphocytes of lamina propria in Crohn's patients by reduced representation and bisulfite sequencing [BiSulfite-seq] [Isolated CD4+ Cells] |
| SRP337159 |
| Homo sapiens Epigenomics [Sperm] |
| SRP337018 |
| whole-genome wide DNA methylation aberration in HCC [Liver] |
| SRP334550 |
| Proinflammatory cytokines promote TET2-mediated DNA demethylation during CD8 T cell effector differentiation [CD8+ T Cells] |
| SRP199025 |
| Molecular mechanism of KCNJ5 gene hotspot mutation in adrenal aldosteronoma [Adrenal Gland] |
| SRP332448 |
| H3K9 dimethylation safeguards cancer cells against activation of the Interferon pathway [WGBS] [U937] |
| SRP332277 |
| Methyl-seq Human [Sperm] |
| SRP332046 |
| The WGBS and ATAC-seq from human serum and amniotic cell [Blood] |
| SRP329794 |
| Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation [Erythroleukemic Cell Line] |
| SRP328700 |
| Whole genome methylation profiliing between the IMU and KRT subtypes of HPV-associated head and neck cell carcinoma (HNSCC) [Head And Neck Cell Carcinoma] |
| SRP268979 |
| Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells [Mammary Luminal Epithelial Cells] |
| SRP286872 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS] [Embryonic Stem Cells, Keratinocytes, Mesenchymal Stem Cells, Pluripotent Stem Cells, Secondary Fibroblasts] |
| SRP291325 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2] [Cultured Fibroblasts, Embryonic Stem Cells, Pluripotent Stem Cells, Reprogramming Intermediate Cells] |
| SRP325924 |
| Distinct DNA methylation landscape between pediatric brain and adult brain [Cerebellum, Cerebrum] |
| SRP325722 |
| Chemical-based external stimulation reprograms human somatic cells into pluripotency (WGBS) [Adult Adipose Derived Mesenchymal Stromal Cells, Chemically Induced Pluripotent Stem Cells, Embryonic Fibroblasts, hES Cells H1, hES Cells H9] |
| SRP325428 |
| Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [Embryonic Stem Cells, Lymphoblastoid Cell Line] |
| SRP321876 |
| Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [Blood, Kidney] |
| SRP325062 |
| Cerebrospinal fluid cell-free DNA methylomes recapture pediatric medulloblastoma tissue's tumor feature [CSF, Tumor_tissue] |
| SRP324100 |
| Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism [WGBS] [Placenta] |
| SRP324016 |
| Cerebrospinal fluid cell-free DNA methylomes subtyping pediatric medulloblastoma [Cerebrospnial Fluid] |
| SRP323990 |
| Identification of DNA Methylation Predicts Onset of PTSD and Depression Following Trauma [Peripheral Blood Mononuclear Cells] |
| SRP323032 |
| Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia [WGBS] [ALL] |
| SRP321573 |
| Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle] |
| SRP320538 |
| Dynamic patterns of DNA methylation in the normal prostate epithelial differentiation program are targets of aberrant methylation in prostate cancer [BiSulfite-seq] [HPr1-AR] |
| SRP319892 |
| Expanding highly homogenous population of human primordial germ cell like cells in long-term and feeder-free culture condition [WGBS] [EGC, Freshly Isolated PGCLC, Long-Term Culture PGCLC C56, Long-Term Culture PGCLC C63, Long-Term Culture PGCLC C71, Long-Term Culture PGCLC C84, iPSC] |
| SRP318399 |
| DNA methylation profiles of four immune cell types from MS patients and healthy controls [CD14+ Monocytes, CD19+ B Cells, CD4+ T Cells, CD8+ T Cells] |
| SRP316873 |
| Whole-Genome Bisulfite Sequencing of Nasopharyngeal Carcinoma and Nasopharyngeal Epithelial Tissues [SeqCapEpi] [C17, C666, Methylation Control, NP361, NP361EBV, NP550EBV, NPC43] |
| SRP059772 |
| Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver [oxBS-Seq and BS-Seq] [Liver, Lung] |
| SRP316059 |
| NSCLP-Twins [Saliva DNA] |
| SRP315878 |
| Homo sapiens Epigenomics [Bone Marrow, Peripheral Blood] |
| SRP315039 |
| DNA methylome and genome sequencing of human ovarian epithelial cell line [Ovarian Epithelial Cell Line] |
| SRP314963 |
| The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS] [Embryonic Kidney Cells] |
| SRP059433 |
| Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS Seq AIDKO MEF1, BS Seq D21 iPSC Clone3, BS Seq D29 AIDKO iPSC Clone1, BS Seq D29 AIDKO iPSC Clone2, BS Seq D29 MALE iPSC Clone1, BS Seq D29 MALE iPSC Clone2, BS Seq D29 MALE iPSC Clone3, BS Seq D29 iPSC Clone3, BS Seq D6 SSEA1 Positive 1, BS Seq D6 SSEA1 Positive 2, BS Seq D6 SSEA1 Positive 3, BS Seq D6 Thy1 Positive 1, BS Seq D6 Thy1 Positive 2, BS Seq D6 Thy1 Positive 3, BS Seq D60 AIDKO iPSC Clone1, BS Seq D60 MALE iPSC Clone1, BS Seq D60 MALE iPSC Clone2, BS Seq D60 MALE iPSC Clone3, BS Seq D60 iPSC Clone2, BS Seq D60 iPSC Clone3, BS Seq ESC 1, BS Seq ESC 2, BS Seq ESC 3, BS Seq MALE MEF 1, BS Seq MALE MEF 2, BS Seq MALE MEF 3, BS Seq MEF 1, BS Seq MEF 2, BS Seq MEF 3, BS Seq P29 iPSC Clone1, Fibroblast, Reprogramming Fibroblast] |
| SRP059313 |
| UPF : Methylation_primates [Blood] |
| SRP059289 |
| Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [DNA methylation] [Gastric Epthelial Cells Isolated, Hepatoctes Induced By Differentiation Of hiMEPs, hiMEPs Derived] |
| SRP310254 |
| DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells [BiSulfite-seq] [hESC-derived Macrophages] |
| SRP268755 |
| Probing the signaling requirements for naïve human pluripotency by high-throughput chemical screening [WGBS] [Naive hESC, Naïve hESC, Primed hESC] |
| SRP309472 |
| Epigenetic crosstalk [KYSE-30] |
| SRP309354 |
| Stable DNMT3L Overexpression in SH-SY5Y Neurons Recreates a Facet of the Genome-Wide Down Syndrome DNA Methylation Signature [SH-SY5Y] |
| SRP309314 |
| Epigenomics of nasal mucosa in children with acute respiratory illness [Nasal Mucosa] |
| SRP058102 |
| Analysis of DNA Methylation in replication and cell cycle arrest. [Primary Dermal Fibroblasts] |
| SRP050499 |
| The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells [Brain, Gonadal Somatic Cells, Heart, Primordial Germ Cells] |
| SRP308854 |
| Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS] |
| SRP308810 |
| Genome-wide Programmable Transcriptional Memory by CRISPR-based Epigenome Editing [HEK293T] |
| SRP308490 |
| Pan-cancer predictions of transcription factors mediating aberrant DNA methylation [HCC1954 Cells, hTERT-HME1 Cells] |
| SRP304712 |
| Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing [Stomach] |
| SRP304684 |
| Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells [WGBS] |
| SRP057450 |
| A novel bivalent chromatin state exists at enhancers [HCT116] |
| SRP008337 |
| Role of DNMT3B in the regulation of early neural and neural crest specifiers [H9 Cells] |
| SRP008144 |
| Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment [B Cell, CD133HSC, HSPC, Neutrohphil] |
| SRP007820 |
| The DNA methylomes of a newborn and a centenarian [CD4+T Cells, Mononuclear Cells] |
| SRP007400 |
| Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates [Sperm] |
| SRP006774 |
| Increased methylation variation in epigenetic domains across cancer types [Adenoma Sample 2, Cancer Sample 1, Cancer Sample 2, Cancer Sample 3, Normal Sample 1, Normal Sample 2, Normal Sample 3] |
| SRP006728 |
| Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) [Breast Cancer Cells] |
| SRP003529 |
| Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells |
| SRP001720 |
| Dynamic Changes in the Human Methylome During Differentiation [Embryonic Stem Cells, Fibroblasts Derived, Newborn Foreskin Fibroblasts] |
| SRP000941 |
| UCSD Human Reference Epigenome Mapping Project [Adipose, Adipose Tissue, Adrenal Gland, Aorta, Bladder, Esophagus, Gastric, Generic Sample From, IMR90 Cells, Left Ventricle, Liver, Lung, Ovary, Pancreas, Psoas Muscle, Right Atrium, Right Ventricle, Sigmoid Colon, Small Intestine, Spleen, Thymus] |
| ERP139499 |
| Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver] |
| ERP135121 |
| Whole Genome Bisulfite Sequencing (WGBS) of the SH-SY5Y human neuroblastoma cell line [Bone Marrow] |
| ERP009555 |
| Effects of HIST1H2ac knockdown on the DNA methylation landscape of breast cancer cell line MCF-7 [MCF-7] |
| ERP130693 |
| Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing [Hela-1, RT112-CP, Ref-gDNA-1000-2] |
| ERP129475 |
| DNA Methylation signature in mononuclear cells and proinflammatory cytokines in Meniere Disease [Mononuclear] |
| ERP109780 |
| Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the AML cell line HL-60/S4 [HL60/S4] |
| ERP123063 |
| Whole genome DNA methylation analysis of human embryonic stem cells [P4_H1_ESC_tWGBS_1, P4_H9_ESC_tWGBS_1] |
| ERP122802 |
| Whole genome DNA methylation analysis of human testicular germ cells [P4_CTR1_TGC_tWGBS_1, P4_CTR2_TGC_tWGBS_1, P4_CTR3_TGC_tWGBS_1, P4_CTR4_TGC_tWGBS_1, P4_CZ1_TGC_tWGBS_1, P4_CZ2_TGC_tWGBS_1, P4_CZ3_TGC_tWGBS_1, P4_CZ4_TGC_tWGBS_1] |
| ERP122363 |
| No evidence for intervention-associated DNA methylation changes in monocytes of patients with posttraumatic stress disorder or anorexia nervosa [AS-222872-LR-34031, AS-222873-LR-34032, AS-222875-LR-34033, AS-222876-LR-34034, AS-222877-LR-34035, AS-241990-LR-35191, K002000217_85588, K002000217_85589, K002000217_85590, K002000217_85591] |
| ERP005229 |
| Whole-genome Bisulfite Sequencing for Methylation Analysis of human monocytes [M55900] |
| ERP117337 |
| Whole genome DNA methylation analysis of sperm DNA from normozoospermic and oligoasthenoteratozoospermic men [P4_NC002_SP_tWGBS_1, P4_NC004_SP_tWGBS_1, P4_NC005_SP_tWGBS_1, P4_NC007_SP_tWGBS_1, P4_NC008_SP_tWGBS_1, P4_OAT001_SP_tWGBS_1, P4_OAT002_SP_tWGBS_1, P4_OAT003_SP_tWGBS_1, P4_OAT005_SP_tWGBS_1, P4_OAT007_SP_tWGBS_1, P4_OAT015_SP_tWGBS_1, P4_OAT017_SP_tWGBS_1, P4_OAT018_SP_tWGBS_1, P4_OAT019_SP_tWGBS_1, P4_OAT020_SP_tWGBS_1, P4_OAT021_SP_tWGBS_1] |
| ERP004221 |
| Genome-wide methylome profiling of normal breast and breast tumors [Breast Cancer, E-MTAB-2014:BT089, E-MTAB-2014:BT126, E-MTAB-2014:BT198, E-MTAB-2014:normal Breast] |
| ERP114912 |
| Genome-wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome [C001, C002, C003, C004, K001, K004, K012, K017] |
| ERP110315 |
| Single molecule sequencing and assembly of flow sorted Y chromosome from HG02982 [Lymphoblastoid Cell Line] |
| ERP110208 |
| Whole genome methylation analysis of sperm and blood from young and old men. [Blood_Old, Blood_Young, Sperm_Old, Sperm_Young] |
| ERP106410 |
| An integrated genomic analysis of L1 retrotransposon mosaicism in the brain [Hippocampus.NeuN+.WGBS.CTRL-36] |
| ERP109664 |
| Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps, dataset 2 [Colon] |
| ERP109610 |
| Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps [Colon] |
| ERP107813 |
| Bisulfite-seq of synovial biopsies from rheumatoid arthritis patients [Synovial Membrane] |
| ERP010942 |
| We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [Embryonic Cell, Embryonic Cell Deficient In Tet1, Tet2 And Tet3, GP5D Cell, LHSAR Cell, LHSAR Cell With HOXB13 Transduced, LoVo Cell, VCap Cell] |
| ERP018009 |
| Base resolution maps of mutations, 5-methylcytosine and 5-hydroxymethylcytosine, and transcriptome of blood, tumour and margin samples from a glioblastoma multiforme patient [Brain] |
| ERP014223 |
| DNA methylation profiling of human naive embryonic stem cells [Embryonic Stem Cell, Pluripotent Stem Cell] |
| ERP011276 |
| 5Aza and TSA treatment of MCF7 cells (BS-seq) [MCF-7] |
| ERP008742 |
| Germ_cell_methylation_dynamics [056202C0-C771-11E6-Bf9C-68B59976A384, 056B78A0-C771-11E6-Bf9C-68B59976A384, 05727D80-C771-11E6-Bf9C-68B59976A384, 0Ec6Eaf0-5Fb7-11E6-B4F3-68B59976A384, 0Ee5Bd90-5Fb7-11E6-B4F3-68B59976A384, 11____EB2_B_-sc-2176524, 12____EB2_BS_-sc-2176525, 25Ab5C60-5Fb7-11E6-9477-68B599768938, 2Fe8D220-5Fb7-11E6-B4F6-68B59976A384, 2Ff491F0-5Fb7-11E6-B4F7-68B59976A384, 2Ffde0C0-5Fb7-11E6-B4F7-68B59976A384, 3F12Cf30-5Fb7-11E6-9477-68B599768938, 3F2015A0-5Fb7-11E6-9477-68B599768938, 47Ad1C40-5Fb7-11E6-B4F7-68B59976A384, 6Fc872F0-1B75-11E6-B065-68B59976A384, 6Ffc7B40-1B75-11E6-B065-68B59976A384, 83494700-1B75-11E6-B769-68B599768938, 835Db960-1B75-11E6-B769-68B599768938, 9____EB1_BS_-sc-2176522, A3_mPGCLC1-sc-2383193, C3_mPGCLC2-sc-2383195, D2_mPGCLC1-sc-2383188, D3_mPGCLC2-sc-2383196, Df89Bf70-C770-11E6-Bf9C-68B59976A384, Dfc31Ef0-C770-11E6-Bf9C-68B59976A384, Dfca9900-C770-11E6-Bf9C-68B59976A384, E3_mPGCLC2-sc-2383197, F1_hPGCLC1-sc-2383182, F28250B0-C770-11E6-83A1-68B599768938, F2895590-C770-11E6-83A1-68B599768938, F2978660-C770-11E6-83A1-68B599768938, F2_mPGCLC1-sc-2383190, F3_mPGCLC2-sc-2383198, G2_mPGCLC1-sc-2383191, G3_mPGCLC2-sc-2383199, H3_mPGCLC2-sc-2383200, PBAT20150318_S1-sc-2268397, PBAT20150318_S2-sc-2268398, PBAT20150318_S22-sc-2268418, PBAT20150318_S5-sc-2268401, PBAT20150318_S6-sc-2268402, hES1-sc-2351342, hES2-sc-2351343, hES3-sc-2351344, hKSR2-sc-2351346, hKSR3-sc-2351347] |
| ERP144942 |
| Validation of differentially methylated DNA regions in colorectal precancerous lesions. [Colon] |
| DRP012061 |
| Epigenetic regulation by nitrosative stress as a potential mechanism of long COVID [Small Airway Epithelial Cell] |
| DRP008243 |
| Transcriptome and methylome analyses of trophoblast stem-like cells derived from primed human embryonic stem cells [TSLprimed] |
| DRP007001 |
| Development of long-read whole genome methylation sequencing method using the enzymatic base conversion and the nanopore sequencing [BT-474, MDA-MB-231] |
| DRP007963 |
| Whole genome bisulfite sequencing of colorectal cancer [Metastatic Cancerous Tissue Obtained, Primary Cancerous Tissue] |
| DRP006124 |
| DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation [Glioma] |
| DRP004736 |
| Generation of human oogonia from induced pluripotent stem cells in vitro [Aggregate Cultured PGCLC, PGCLC, iMeLC, iPSC] |
| DRP003407 |
| Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [EpiLC, IMR-90, Spermatogonia] |
| DRP001914 |
| Omics catalogue of lung adenocarcinoma cell lines [H1299 Lung Adenocarcinoma Cell Lines; BSseq;, H1437 Lung Adenocarcinoma Cell Lines; BSseq;, H1703 Lung Adenocarcinoma Cell Lines; BSseq;, H2126 Lung Adenocarcinoma Cell Lines; BSseq;, H2228 Lung Adenocarcinoma Cell Lines; BSseq;, H2347 Lung Adenocarcinoma Cell Lines; BSseq;] |
| Common |
| Common methbase tracks for the hg38 assembly |
|
|
|
|
|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| p12
Fix Patches |
| Reference Assembly Fix Patch Sequence Alignments |
| p12
Alt Haplotypes |
| Reference Assembly Alternate Haplotype Sequence Alignments |
| p12
Assembly |
| Assembly from Fragments |
| Centromeres |
| Centromere Locations |
| p12
Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
| Clone Ends |
| Mapping of clone libraries end placements |
FISH Clones |
| Clones Placed on Cytogenetic Map Using FISH |
| p12
Gap |
| Gap Locations |
| p12
GC Percent |
| GC Percent in 5-Base Windows |
| GRC Contigs |
| Genome Reference Consortium Contigs |
| GRC Incident |
| GRC Incident Database |
| Hg19 Diff |
| Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19) |
| p12
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| updated
LRG Regions |
| Locus Reference Genomic (LRG) Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly |
| Mappability... |
| Hoffman Lab Umap and Bismap Mappability |
| Bismap |
| Single-read and multi-read mappability after bisulfite conversion |
| Umap |
| Single-read and multi-read mappability by Umap |
| p12
RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Scaffolds |
| GRCh38 Defined Scaffold Identifiers |
| Short Match |
| Perfect Matches to Short Sequence () |
| STS Markers |
| STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps |
|
|
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|---|
| p12
GENCODE v32 |
| GENCODE v32 Comprehensive Transcript Set (only Basic displayed by default) |
| NCBI RefSeq |
| RefSeq gene predictions from NCBI |
| p12
Other RefSeq |
| Non-Human RefSeq Genes |
| p12
All GENCODE... |
| All GENCODE transcripts, including comprehensive set and previous version |
| All GENCODE V31 |
| All GENCODE annotations from V31 (Ensembl 97) |
| All GENCODE V29 |
| All GENCODE annotations from V29 (Ensembl 94) |
| All GENCODE V28 |
| All GENCODE annotations from V28 (Ensembl 92) |
| All GENCODE V27 |
| All GENCODE annotations from V27 (Ensembl 90) |
| All GENCODE V26 |
| All GENCODE annotations from V26 (Ensembl 88) |
| All GENCODE V25 |
| All GENCODE transcripts including comprehensive set V25 |
| All GENCODE V24 |
| All GENCODE transcripts including comprehensive set V24 |
| All GENCODE V23 |
| All GENCODE transcripts including comprehensive set V23 |
| All GENCODE V22 |
| All GENCODE transcripts including comprehensive set V22 |
| GENCODE V20 (Ensembl 76) |
| Gene Annotations from GENCODE Version 20 (Ensembl 76) |
| p12
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| CCDS |
| Consensus CDS |
| Geneid Genes |
| Geneid Gene Predictions |
| p12
Genscan Genes |
| Genscan Gene Predictions |
IKMC Genes Mapped |
| International Knockout Mouse Consortium Genes Mapped to Human Genome |
| LRG Transcripts |
| Locus Reference Genomic (LRG) Fixed Transcript Annotations |
| MANE select v0.6 |
| NCBI RefSeq and Ensembl transcripts from the MANE Project (v0.6) |
| Non-coding RNA... |
| RNA sequences that do not code for a protein |
|
lincRNA RNA-Seq |
| lincRNA RNA-Seq reads expression abundances |
|
lincRNA TUCP |
| lincRNA and TUCP transcripts |
| sno/miRNA |
| C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
| Old UCSC Genes |
| Previous Version of UCSC Genes |
| p12
ORFeome Clones |
| ORFeome Collaboration Gene Clones |
| p12
Pfam in UCSC Gene |
| Pfam Domains in UCSC Genes |
| RetroGenes V9 |
| Retroposed Genes V9, Including Pseudogenes |
| SGP Genes |
| SGP Gene Predictions Using Mouse/Human Homology |
| SIB Genes |
| Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs |
| TransMap V5... |
| TransMap Alignments Version 5 |
| TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
| TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
| TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
| TransMap ESTs |
| TransMap EST Mappings Version 5 |
| p12
UCSC Alt Events |
| Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes |
| UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
|
|
|
|
|---|
| Cancer Gene Expr... |
| Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| Cancer Gene Expr |
| Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| Cancer Transc Expr |
| Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| ClinGen CNVs |
| Clinical Genome Resource (ClinGen) CNVs |
| ClinVar Variants |
| ClinVar Variants |
|
Coriell CNVs |
| Coriell Cell Line Copy Number Variants |
| Development Delay |
| Copy Number Variation Morbidity Map of Developmental Delay |
| Gene Interactions |
| Protein Interactions from Curated Databases and Text-Mining |
| GeneReviews |
| GeneReviews |
| GWAS Catalog |
| NHGRI-EBI Catalog of Published Genome-Wide Association Studies |
| SNPedia |
| SNPedia |
| TCGA Pan-Cancer |
| TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33) |
| UniProt Variants |
| UniProt/SwissProt Amino Acid Substitutions |
| Variants in Papers... |
| Genetic Variants mentioned in scientific publications |
| Mastermind Variants |
| Genomenon Mastermind Variants extracted from full text publications |
|
|
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|
|---|
| p12
Human mRNAs |
| Human mRNAs from GenBank |
| p12
Spliced ESTs |
| Human ESTs That Have Been Spliced |
| p12
Human ESTs |
| Human ESTs Including Unspliced |
| p12
Other ESTs |
| Non-Human ESTs from GenBank |
| p12
Other mRNAs |
| Non-Human mRNAs from GenBank |
| SIB Alt-Splicing |
| Alternative Splicing Graph from Swiss Institute of Bioinformatics |
|
|
|
|
|---|
|
p12
GTEx Gene |
| Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) |
| GTEx Transcript |
| Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors |
| Affy GNF1H |
| Alignments of Affymetrix Consensus/Exemplars from GNF1H |
| Affy U133 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 |
| Affy U95 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U95 |
| new
EPDnew Promoters |
| Promoters from EPDnew |
| GNF Atlas 2 |
| GNF Expression Atlas 2 |
| GWIPS-viz Riboseq |
| Ribosome Profiling from GWIPS-viz |
| miRNA Tissue Atlas |
| Tissue-Specific microRNA Expression from Two Individuals |
|
|
|
|
|---|
p12
ENCODE Regulation... |
| Integrated Regulation from ENCODE |
|
p12
Transcription |
| Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE |
|
p12
Layered H3K4Me1 |
| H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE |
|
p12
Layered H3K4Me3 |
| H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE |
|
p12
Layered H3K27Ac |
| H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE |
|
p12
DNase Clusters |
| DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types) |
|
p12
DNase Signal |
| DNase I Hypersensitivity Signal Colored by Similarity from ENCODE |
|
p12
DNase HS |
| DNase I Hypersensitivity in 95 cell types from ENCODE |
|
TF Clusters |
| Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3 |
|
TF ChIP |
| Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3 |
| p12
CpG Islands... |
| CpG Islands (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| new
Hi-C and Micro-C |
| Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6 |
| ORegAnno |
| Regulatory elements from ORegAnno |
| RefSeq Func Elems |
| NCBI RefSeq Functional Elements |
|
|
|
|
|---|
| Conservation |
| Vertebrate Multiz Alignment & Conservation (100 Species) |
| Cons 7 Verts |
| Multiz Alignment & Conservation (7 Species) |
| Cons 20 Mammals |
| Primates Multiz Alignment & Conservation (20 Species) |
| Cons 30 Primates |
| Mammals Multiz Alignment & Conservation (27 primates) |
| Primate Chain/Net |
| Primate Genomes, Chain and Net Alignments |
| Placental Chain/Net |
| Non-primate Placental Mammal Genomes, Chain and Net Alignments |
| Vertebrate Chain/Net |
| Non-placental Vertebrate Genomes, Chain and Net Alignments |
|
|
|
|
|---|
| dbSNP 153 |
| Short Genetic Variants from dbSNP release 153 |
| Common SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples |
| Common SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples |
| Common SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples |
| Common SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples |
| Common SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples |
| Common SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples |
| Common SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples |
| All SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) |
| All SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) |
| All SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) |
| All SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) |
| All SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) |
| All SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) |
| All SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) |
| Flagged SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc |
| Flagged SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci |
| Mult. SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci |
| Mult. SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci |
| Mult. SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci |
| Mult. SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci |
| Mult. SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci |
| Mult. SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci |
| 1000G Ph3 Vars |
| 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels |
| DGV Struct Var |
| Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) |
| gnomAD Variants... |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants |
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gnomAD v2 |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1 |
| Platinum Genomes |
| Platinum genome variants |
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| p12
RepeatMasker |
| Repeating Elements by RepeatMasker |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| RepeatMasker Viz. |
| Detailed Visualization of RepeatMasker Annotations |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Segmental Dups |
| Duplications of >1000 Bases of Non-RepeatMasked Sequence |
| Self Chain |
| Human Chained Self Alignments |
| p12
Simple Repeats |
| Simple Tandem Repeats by TRF |
| p12
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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